Variant report

Variant	rs17765217
Chromosome Location	chr7:22182681-22182682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22181264..22183097-chr7:22184358..22186450,2	K562	blood:

Variant related genes	Relation type
ENSG00000136237	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10266511	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276439	0.93[CEU][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276809	0.93[CEU][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17709607	0.93[CEU][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17709885	0.81[EUR][1000 genomes]
rs17766562	0.93[CEU][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17766936	0.93[CEU][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3807525	0.93[CEU][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4288272	0.86[CEU][hapmap];0.90[ASN][1000 genomes]
rs6959894	0.93[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6960745	0.93[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972298	0.93[CEU][hapmap]
rs7782218	0.92[CEU][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs883073	0.86[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22153000-22193000	Strong transcription	Dnd41	blood
2	chr7:22156000-22186600	Weak transcription	Brain Germinal Matrix	brain
3	chr7:22156800-22186400	Strong transcription	Liver	Liver
4	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
5	chr7:22160400-22183000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:22162200-22186600	Weak transcription	GM12878-XiMat	blood
7	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:22163000-22187800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:22163000-22190600	Strong transcription	Fetal Thymus	thymus
10	chr7:22163200-22186800	Weak transcription	Right Atrium	heart
11	chr7:22165400-22183400	Weak transcription	Primary B cells from cord blood	blood
12	chr7:22168000-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:22168000-22195800	Weak transcription	NHEK	skin
14	chr7:22169400-22186600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:22174400-22186400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:22174400-22190400	Strong transcription	HepG2	liver
17	chr7:22175200-22193600	Weak transcription	HUVEC	blood vessel
18	chr7:22176200-22185600	Genic enhancers	Brain Hippocampus Middle	brain
19	chr7:22176200-22198200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr7:22176400-22185600	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr7:22176400-22186800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:22176400-22203200	Weak transcription	Stomach Mucosa	stomach
23	chr7:22176600-22183600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:22176600-22184600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr7:22176800-22184800	Genic enhancers	Brain Inferior Temporal Lobe	brain
26	chr7:22177000-22182800	Strong transcription	Thymus	Thymus
27	chr7:22177400-22186600	Weak transcription	Ovary	ovary
28	chr7:22177600-22183400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:22177800-22185400	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr7:22177800-22195800	Weak transcription	HMEC	breast
31	chr7:22179000-22186800	Weak transcription	Fetal Brain Female	brain
32	chr7:22179200-22183400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr7:22179200-22184000	Weak transcription	Colonic Mucosa	Colon
34	chr7:22179400-22191400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr7:22179600-22186400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr7:22179600-22206600	Weak transcription	Fetal Stomach	stomach
37	chr7:22179800-22183200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:22180200-22184800	Genic enhancers	Brain Substantia Nigra	brain
39	chr7:22180400-22183400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:22180800-22185800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr7:22181000-22183000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr7:22181000-22184600	Genic enhancers	Brain Angular Gyrus	brain
43	chr7:22181000-22185000	Strong transcription	Left Ventricle	heart
44	chr7:22181000-22185400	Genic enhancers	Brain Cingulate Gyrus	brain
45	chr7:22181000-22186600	Weak transcription	Fetal Kidney	kidney
46	chr7:22181200-22183800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:22181400-22183200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:22181400-22183200	Weak transcription	Aorta	Aorta
49	chr7:22181400-22184000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:22181400-22184000	Weak transcription	Fetal Intestine Small	intestine

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