Variant report

Variant	rs6960745
Chromosome Location	chr7:22198209-22198210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10266511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17709607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17709885	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs17765217	0.93[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17766936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3807525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3823663	1.00[CHB][hapmap]
rs4288272	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6959894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6972298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7782218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs883073	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
2	chr7:22176400-22203200	Weak transcription	Stomach Mucosa	stomach
3	chr7:22179600-22206600	Weak transcription	Fetal Stomach	stomach
4	chr7:22181400-22199000	Weak transcription	Gastric	stomach
5	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
6	chr7:22187000-22204800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:22187200-22199000	Weak transcription	Fetal Brain Male	brain
8	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
9	chr7:22192600-22199400	Strong transcription	HepG2	liver
10	chr7:22192600-22200800	Strong transcription	Fetal Intestine Large	intestine
11	chr7:22192600-22208200	Strong transcription	Liver	Liver
12	chr7:22193600-22207800	Weak transcription	Placenta	Placenta
13	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
14	chr7:22194000-22201600	Genic enhancers	Brain Cingulate Gyrus	brain
15	chr7:22194200-22199000	Strong transcription	Fetal Thymus	thymus
16	chr7:22194200-22201200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:22194200-22202600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:22194200-22223200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:22194400-22198400	Weak transcription	Brain Germinal Matrix	brain
20	chr7:22194400-22218200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:22194400-22219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:22194400-22227200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:22194400-22232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:22194600-22221200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:22195200-22204000	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr7:22196000-22198400	Strong transcription	Esophagus	oesophagus
27	chr7:22196000-22201200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:22196000-22204200	Strong transcription	Dnd41	blood
29	chr7:22196200-22213800	Weak transcription	GM12878-XiMat	blood
30	chr7:22196400-22200400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:22196400-22200600	Weak transcription	Osteobl	bone
32	chr7:22196400-22213800	Weak transcription	Primary B cells from cord blood	blood
33	chr7:22196600-22198400	Enhancers	Brain Substantia Nigra	brain
34	chr7:22196600-22213600	Weak transcription	HUVEC	blood vessel
35	chr7:22196600-22214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:22196800-22216800	Weak transcription	Spleen	Spleen
37	chr7:22196800-22218000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr7:22197400-22198400	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr7:22197400-22199400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:22197600-22206600	Weak transcription	Fetal Kidney	kidney
41	chr7:22197600-22213400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:22197600-22213400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:22197600-22213400	Weak transcription	Thymus	Thymus
44	chr7:22197800-22206000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr7:22197800-22206200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:22198000-22199400	Weak transcription	Fetal Intestine Small	intestine
47	chr7:22198000-22199400	Weak transcription	Left Ventricle	heart
48	chr7:22198000-22200200	Weak transcription	Pancreas	Pancrea
49	chr7:22198000-22212800	Weak transcription	NHEK	skin
50	chr7:22198000-22223600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links