Variant report

Variant	rs883073
Chromosome Location	chr7:22184259-22184260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22182780..22184879-chr7:22188004..22190360,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10266511	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276439	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276809	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17709607	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17709885	0.83[EUR][1000 genomes]
rs17765217	0.86[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766562	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17766936	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3807525	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3823663	1.00[CHB][hapmap]
rs4288272	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6959894	0.81[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6960745	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972298	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs7782218	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22153000-22193000	Strong transcription	Dnd41	blood
2	chr7:22156000-22186600	Weak transcription	Brain Germinal Matrix	brain
3	chr7:22156800-22186400	Strong transcription	Liver	Liver
4	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
5	chr7:22162200-22186600	Weak transcription	GM12878-XiMat	blood
6	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:22163000-22187800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:22163000-22190600	Strong transcription	Fetal Thymus	thymus
9	chr7:22163200-22186800	Weak transcription	Right Atrium	heart
10	chr7:22168000-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:22168000-22195800	Weak transcription	NHEK	skin
12	chr7:22169400-22186600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:22174400-22186400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:22174400-22190400	Strong transcription	HepG2	liver
15	chr7:22175200-22193600	Weak transcription	HUVEC	blood vessel
16	chr7:22176200-22185600	Genic enhancers	Brain Hippocampus Middle	brain
17	chr7:22176200-22198200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:22176400-22185600	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr7:22176400-22186800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:22176400-22203200	Weak transcription	Stomach Mucosa	stomach
21	chr7:22176600-22184600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr7:22176800-22184800	Genic enhancers	Brain Inferior Temporal Lobe	brain
23	chr7:22177400-22186600	Weak transcription	Ovary	ovary
24	chr7:22177800-22185400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr7:22177800-22195800	Weak transcription	HMEC	breast
26	chr7:22179000-22186800	Weak transcription	Fetal Brain Female	brain
27	chr7:22179400-22191400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:22179600-22186400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:22179600-22206600	Weak transcription	Fetal Stomach	stomach
30	chr7:22180200-22184800	Genic enhancers	Brain Substantia Nigra	brain
31	chr7:22180800-22185800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr7:22181000-22184600	Genic enhancers	Brain Angular Gyrus	brain
33	chr7:22181000-22185000	Strong transcription	Left Ventricle	heart
34	chr7:22181000-22185400	Genic enhancers	Brain Cingulate Gyrus	brain
35	chr7:22181000-22186600	Weak transcription	Fetal Kidney	kidney
36	chr7:22181400-22186800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr7:22181400-22192800	Weak transcription	Right Ventricle	heart
38	chr7:22181400-22193600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:22181400-22199000	Weak transcription	Gastric	stomach
40	chr7:22181800-22193200	Weak transcription	Placenta	Placenta
41	chr7:22182400-22184400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:22182600-22184400	Weak transcription	Fetal Heart	heart
43	chr7:22182600-22186400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:22182800-22185400	Strong transcription	Fetal Intestine Large	intestine
45	chr7:22183000-22184400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:22183000-22184400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr7:22183000-22184600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
48	chr7:22183000-22185400	Strong transcription	Thymus	Thymus
49	chr7:22183200-22184400	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr7:22183200-22184400	Strong transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links