Variant report

Variant	rs17709885
Chromosome Location	chr7:22222530-22222531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10266511	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10276439	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs10276809	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs17709607	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs17765217	0.81[EUR][1000 genomes]
rs17766562	0.84[CEU][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17766936	0.84[CEU][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3807525	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs6950173	1.00[JPT][hapmap]
rs6959894	0.84[CEU][hapmap];0.82[AMR][1000 genomes]
rs6960745	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs6972298	0.84[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7782218	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs883073	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606405	chr7:22202485-22235825	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
3	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:22194200-22223200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:22194400-22227200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:22194400-22232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:22198000-22223600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:22207000-22232000	Weak transcription	Fetal Stomach	stomach
9	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
10	chr7:22214600-22232000	Weak transcription	Small Intestine	intestine
11	chr7:22214600-22232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:22214800-22232600	Weak transcription	NHEK	skin
13	chr7:22215000-22226600	Weak transcription	Esophagus	oesophagus
14	chr7:22215400-22232000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:22215600-22223600	Strong transcription	Fetal Thymus	thymus
16	chr7:22217400-22229000	Weak transcription	Pancreas	Pancrea
17	chr7:22218400-22226600	Weak transcription	Fetal Intestine Large	intestine
18	chr7:22218400-22227000	Weak transcription	Spleen	Spleen
19	chr7:22218600-22223000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:22218600-22227000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:22218600-22227200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:22218600-22227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:22218600-22227200	Weak transcription	Lung	lung
24	chr7:22218600-22229000	Weak transcription	Fetal Intestine Small	intestine
25	chr7:22218800-22232000	Weak transcription	Thymus	Thymus
26	chr7:22219600-22234600	Weak transcription	Primary T cells from cord blood	blood
27	chr7:22219800-22223800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:22220200-22229600	Weak transcription	Left Ventricle	heart
29	chr7:22220400-22224200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr7:22220400-22226600	Weak transcription	Liver	Liver
31	chr7:22220600-22226600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr7:22220600-22227200	Weak transcription	Primary B cells from cord blood	blood
33	chr7:22221000-22222800	Enhancers	Fetal Brain Female	brain
34	chr7:22221800-22223600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:22221800-22224000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:22221800-22224000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr7:22221800-22230200	Weak transcription	Fetal Brain Male	brain
38	chr7:22221800-22232400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:22221800-22233200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr7:22222000-22223400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr7:22222000-22223400	Enhancers	Brain Cingulate Gyrus	brain
42	chr7:22222000-22223800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:22222000-22224000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:22222000-22224000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr7:22222000-22224200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:22222000-22224600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:22222000-22224800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr7:22222000-22227400	Weak transcription	HepG2	liver
49	chr7:22222000-22229200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr7:22222200-22222600	Enhancers	Brain Anterior Caudate	brain

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