Variant report

Variant	rs3807525
Chromosome Location	chr7:22195152-22195153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10266511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17709885	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs17765217	0.93[CEU][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17766562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17766936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3823663	1.00[CHB][hapmap]
rs4288272	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6959894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6960745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6972298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7782218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs883073	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
2	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:22168000-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:22168000-22195800	Weak transcription	NHEK	skin
5	chr7:22176200-22198200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:22176400-22203200	Weak transcription	Stomach Mucosa	stomach
7	chr7:22177800-22195800	Weak transcription	HMEC	breast
8	chr7:22179600-22206600	Weak transcription	Fetal Stomach	stomach
9	chr7:22181400-22199000	Weak transcription	Gastric	stomach
10	chr7:22184400-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
12	chr7:22187000-22204800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:22187200-22199000	Weak transcription	Fetal Brain Male	brain
14	chr7:22187800-22195600	Weak transcription	NHDF-Ad	bronchial
15	chr7:22187800-22196200	Weak transcription	Fetal Kidney	kidney
16	chr7:22188000-22195600	Weak transcription	GM12878-XiMat	blood
17	chr7:22189400-22196000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:22189400-22196000	Weak transcription	Left Ventricle	heart
19	chr7:22189400-22197200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:22190000-22195400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:22190000-22195800	Weak transcription	Pancreas	Pancrea
22	chr7:22190000-22195800	Weak transcription	Spleen	Spleen
23	chr7:22190000-22196000	Weak transcription	Esophagus	oesophagus
24	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
25	chr7:22190200-22195600	Weak transcription	Osteobl	bone
26	chr7:22191400-22195800	Enhancers	Brain Hippocampus Middle	brain
27	chr7:22192600-22198200	Genic enhancers	Brain Anterior Caudate	brain
28	chr7:22192600-22199400	Strong transcription	HepG2	liver
29	chr7:22192600-22200800	Strong transcription	Fetal Intestine Large	intestine
30	chr7:22192600-22208200	Strong transcription	Liver	Liver
31	chr7:22192800-22198200	Enhancers	Brain Angular Gyrus	brain
32	chr7:22193000-22196000	Genic enhancers	Dnd41	blood
33	chr7:22193000-22196400	Strong transcription	Primary B cells from cord blood	blood
34	chr7:22193600-22197000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr7:22193600-22207800	Weak transcription	Placenta	Placenta
36	chr7:22193800-22195400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:22193800-22195600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:22193800-22196600	Genic enhancers	Brain Substantia Nigra	brain
39	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
40	chr7:22194000-22197400	Genic enhancers	Brain Inferior Temporal Lobe	brain
41	chr7:22194000-22201600	Genic enhancers	Brain Cingulate Gyrus	brain
42	chr7:22194200-22195400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:22194200-22195600	Weak transcription	HUVEC	blood vessel
44	chr7:22194200-22195800	Weak transcription	Fetal Intestine Small	intestine
45	chr7:22194200-22195800	Weak transcription	Lung	lung
46	chr7:22194200-22196000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:22194200-22196400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr7:22194200-22199000	Strong transcription	Fetal Thymus	thymus
49	chr7:22194200-22201200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr7:22194200-22202600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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