Variant report

Variant	rs1777542
Chromosome Location	chr1:61473654-61473655
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61440825..61442861-chr1:61471993..61474071,2	K562	blood:
2	chr1:61471541..61473725-chr1:61514267..61515959,2	K562	blood:
3	chr1:61472293..61476922-chr1:61520957..61524136,5	K562	blood:

rs_ID	r²[population]
rs1694221	1.00[AMR][1000 genomes]
rs1777535	1.00[AMR][1000 genomes]
rs1779852	1.00[AMR][1000 genomes]
rs1779853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779859	1.00[AMR][1000 genomes]
rs1779860	1.00[AMR][1000 genomes]
rs1779862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779863	1.00[AMR][1000 genomes]
rs544496	1.00[AMR][1000 genomes]
rs667553	1.00[AMR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61458200-61477600	Weak transcription	Left Ventricle	heart
2	chr1:61466600-61478800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:61470000-61474200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:61470600-61474000	Enhancers	Brain Cingulate Gyrus	brain
5	chr1:61472000-61473800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:61472000-61479000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:61472200-61474000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:61472200-61474200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:61472200-61474600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:61472200-61475200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:61472200-61476800	Weak transcription	Brain Anterior Caudate	brain
12	chr1:61472200-61476800	Weak transcription	Fetal Brain Male	brain
13	chr1:61472200-61476800	Weak transcription	Fetal Heart	heart
14	chr1:61472200-61477400	Weak transcription	Brain Angular Gyrus	brain
15	chr1:61472400-61477600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:61472400-61477600	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:61472400-61477800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:61472400-61479000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:61472600-61474000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:61472600-61477400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:61472600-61477800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:61472600-61477800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:61472800-61473800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:61472800-61476800	Weak transcription	Fetal Brain Female	brain
25	chr1:61473200-61474000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:61473200-61476200	Enhancers	Brain Germinal Matrix	brain
27	chr1:61473400-61474200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr1:61473400-61476800	Weak transcription	K562	blood
29	chr1:61473400-61477000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:61473600-61473800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:61473600-61473800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:61473600-61477200	Weak transcription	Brain Substantia Nigra	brain

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