Variant report

Variant	rs1779852
Chromosome Location	chr1:61512794-61512795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61504351..61505961-chr1:61510589..61512911,2	K562	blood:
2	chr1:61511959..61514173-chr1:61514236..61516946,2	MCF-7	breast:
3	chr1:61512478..61530748-chr1:61539371..61553659,68	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction
ENSG00000263380	Chromatin interaction

rs_ID	r²[population]
rs11811322	1.00[AMR][1000 genomes]
rs1694221	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1777535	1.00[AMR][1000 genomes]
rs1777542	1.00[AMR][1000 genomes]
rs1779853	1.00[AMR][1000 genomes]
rs1779859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779860	1.00[AMR][1000 genomes]
rs1779862	1.00[AMR][1000 genomes]
rs1779863	1.00[AMR][1000 genomes]
rs544496	1.00[AMR][1000 genomes]
rs61131876	1.00[AMR][1000 genomes]
rs667553	1.00[AMR][1000 genomes]
rs72911911	1.00[AMR][1000 genomes]
rs72911916	1.00[AMR][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61509000-61515000	Weak transcription	Hela-S3	cervix
2	chr1:61509200-61515200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:61509200-61515400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:61509400-61512800	Weak transcription	NHEK	skin
5	chr1:61509400-61514200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:61509400-61515200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:61509400-61515200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:61509400-61515400	Weak transcription	Fetal Heart	heart
9	chr1:61509400-61515400	Weak transcription	Ovary	ovary
10	chr1:61509400-61515400	Weak transcription	Right Atrium	heart
11	chr1:61509400-61515600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:61509600-61515200	Weak transcription	Adipose Nuclei	Adipose
13	chr1:61509600-61515200	Weak transcription	Brain Anterior Caudate	brain
14	chr1:61509600-61515200	Weak transcription	Fetal Stomach	stomach
15	chr1:61509600-61515200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:61509600-61515400	Weak transcription	Brain Hippocampus Middle	brain
17	chr1:61509600-61515400	Weak transcription	Colonic Mucosa	Colon
18	chr1:61509600-61515400	Weak transcription	Right Ventricle	heart
19	chr1:61509800-61515000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:61509800-61515000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:61509800-61515200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr1:61510000-61515400	Weak transcription	Fetal Brain Female	brain
23	chr1:61510400-61515200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:61512200-61514800	Enhancers	K562	blood
25	chr1:61512600-61513200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:61512600-61513200	Enhancers	HMEC	breast

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