Variant report

Variant	rs1779859
Chromosome Location	chr1:61502924-61502925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11811322	1.00[AMR][1000 genomes]
rs1694221	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1777535	1.00[AMR][1000 genomes]
rs1777542	1.00[AMR][1000 genomes]
rs1779852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779853	1.00[AMR][1000 genomes]
rs1779860	1.00[AMR][1000 genomes]
rs1779862	1.00[AMR][1000 genomes]
rs1779863	1.00[AMR][1000 genomes]
rs544496	1.00[AMR][1000 genomes]
rs61131876	1.00[AMR][1000 genomes]
rs667553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401707	chr1:61500864-61505062	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61489600-61508200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:61502800-61508200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:61502800-61508600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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