Variant report

Variant	rs1779853
Chromosome Location	chr1:61470727-61470728
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61465921..61467926-chr1:61468526..61470796,2	K562	blood:
2	chr1:61463405..61465058-chr1:61469720..61472107,2	K562	blood:
3	chr1:61466923..61469524-chr1:61469803..61471380,2	K562	blood:

rs_ID	r²[population]
rs1694221	1.00[AMR][1000 genomes]
rs1777535	1.00[AMR][1000 genomes]
rs1777542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779852	1.00[AMR][1000 genomes]
rs1779859	1.00[AMR][1000 genomes]
rs1779860	1.00[AMR][1000 genomes]
rs1779862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779863	1.00[AMR][1000 genomes]
rs544496	1.00[AMR][1000 genomes]
rs667553	1.00[AMR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61456400-61471400	Weak transcription	Fetal Brain Female	brain
2	chr1:61458200-61477600	Weak transcription	Left Ventricle	heart
3	chr1:61466600-61478800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:61469000-61471600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:61469200-61471600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:61469600-61471400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:61469800-61471400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:61470000-61470800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:61470000-61470800	Enhancers	Fetal Muscle Leg	muscle
10	chr1:61470000-61471000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:61470000-61471000	Enhancers	NHEK	skin
12	chr1:61470000-61471400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr1:61470000-61471400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:61470000-61471400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:61470000-61471600	Enhancers	Brain Germinal Matrix	brain
16	chr1:61470000-61472000	Enhancers	Placenta	Placenta
17	chr1:61470000-61472400	Enhancers	Fetal Lung	lung
18	chr1:61470000-61472600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr1:61470000-61474200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:61470200-61470800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr1:61470200-61471400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:61470200-61471400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:61470200-61473400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:61470400-61471600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:61470400-61471600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:61470400-61471800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:61470400-61471800	Weak transcription	HMEC	breast
28	chr1:61470600-61471400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr1:61470600-61471400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr1:61470600-61471600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:61470600-61471600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr1:61470600-61471600	Weak transcription	Fetal Stomach	stomach
33	chr1:61470600-61471600	Weak transcription	K562	blood
34	chr1:61470600-61471800	Weak transcription	Spleen	Spleen
35	chr1:61470600-61474000	Enhancers	Brain Cingulate Gyrus	brain

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