Variant report

Variant	rs1779863
Chromosome Location	chr1:61542892-61542893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr1:61542384-61544453	K562	blood:	n/a	chr1:61542722-61542731 chr1:61543808-61543818
2	HEY1	chr1:61542394-61543172	HepG2	liver:	n/a	n/a
3	CREB1	chr1:61542419-61543181	HepG2	liver:	n/a	n/a
4	CREB1	chr1:61542614-61543164	ECC-1	luminal epithelium:	n/a	n/a
5	EP300	chr1:61542355-61543923	SK-N-SH	brain:	n/a	chr1:61543091-61543105
6	MAX	chr1:61542366-61543225	K562	blood:	n/a	chr1:61542722-61542731
7	NFIC	chr1:61542314-61543961	ECC-1	luminal epithelium:	n/a	n/a
8	SP1	chr1:61542292-61544112	HCT-116	colon:	n/a	chr1:61543811-61543820 chr1:61543809-61543821 chr1:61543810-61543820 chr1:61543811-61543820 chr1:61542765-61542776 chr1:61543810-61543820 chr1:61543760-61543781 chr1:61543809-61543821 chr1:61543806-61543820 chr1:61543810-61543819 chr1:61542733-61542744 chr1:61542769-61542783
9	ZBTB7A	chr1:61542652-61542947	HepG2	liver:	n/a	n/a
10	POU2F2	chr1:61542343-61543091	GM12878	blood:	n/a	chr1:61542857-61542864 chr1:61542854-61542865 chr1:61542856-61542865 chr1:61542853-61542868 chr1:61542854-61542865 chr1:61542851-61542869 chr1:61542856-61542866 chr1:61542856-61542864 chr1:61542855-61542865
11	RAD21	chr1:61542620-61543165	Hela-S3	cervix:	n/a	chr1:61542820-61542834
12	RCOR1	chr1:61542408-61543054	HepG2	liver:	n/a	n/a
13	CEBPB	chr1:61542510-61543369	A549	lung:	n/a	n/a
14	MAX	chr1:61542623-61543104	MCF-7	breast:	n/a	chr1:61542722-61542731
15	NFYB	chr1:61542689-61544071	Hela-S3	cervix:	n/a	chr1:61542712-61542727 chr1:61543756-61543771 chr1:61542712-61542727 chr1:61542713-61542727
16	UBTF	chr1:61542392-61543079	K562	blood:	n/a	n/a
17	YY1	chr1:61542656-61542966	H1-hESC	embryonic stem cell:	n/a	n/a
18	GATA3	chr1:61542410-61543350	A549	lung:	n/a	n/a
19	GTF2F1	chr1:61542452-61543209	Hela-S3	cervix:	n/a	n/a
20	FOXA2	chr1:61542716-61543067	HepG2	liver:	n/a	n/a
21	EP300	chr1:61542812-61543738	Hela-S3	cervix:	n/a	chr1:61543091-61543105
22	FOXP2	chr1:61542519-61543042	PFSK-1	brain:	n/a	n/a
23	CEBPB	chr1:61542599-61543165	HepG2	liver:	n/a	n/a
24	POLR2A	chr1:61542420-61543173	HUVEC	blood vessel:	n/a	n/a
25	POLR2A	chr1:61542405-61543185	K562	blood:	n/a	n/a
26	POLR2A	chr1:61542258-61543249	HUVEC	blood vessel:	n/a	n/a
27	MYC	chr1:61542361-61543196	MCF10A-Er-Src	breast:	n/a	chr1:61542722-61542731
28	MAX	chr1:61542241-61544498	NB4	blood:	n/a	chr1:61542722-61542731 chr1:61543808-61543818
29	CREB1	chr1:61542616-61543098	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr1:61542343-61544032	NB4	blood:	n/a	n/a
31	TEAD4	chr1:61542530-61543172	ECC-1	luminal epithelium:	n/a	n/a
32	HCFC1	chr1:61542489-61544154	K562	blood:	n/a	n/a
33	WRNIP1	chr1:61542421-61542936	GM12878	blood:	n/a	n/a
34	NRF1	chr1:61542261-61544243	SK-N-SH	brain:	n/a	chr1:61543810-61543819
35	POLR2A	chr1:61542469-61543154	Hela-S3	cervix:	n/a	n/a
36	YY1	chr1:61542467-61543096	HepG2	liver:	n/a	n/a
37	CEBPB	chr1:61542660-61543189	MCF-7	breast:	n/a	n/a
38	YY1	chr1:61542469-61543030	ECC-1	luminal epithelium:	n/a	n/a
39	TAF1	chr1:61542435-61543138	K562	blood:	n/a	n/a
40	TCF7L2	chr1:61542514-61543132	HCT-116	colon:	n/a	n/a
41	MAX	chr1:61542343-61543286	SK-N-SH	brain:	n/a	chr1:61542722-61542731
42	POLR2A	chr1:61542427-61543097	HepG2	liver:	n/a	n/a
43	CEBPB	chr1:61542717-61543135	HepG2	liver:	n/a	n/a
44	EP300	chr1:61542521-61543081	SK-N-SH_RA	brain:	n/a	n/a
45	HEY1	chr1:61542414-61543178	K562	blood:	n/a	n/a
46	RUNX3	chr1:61542402-61543018	GM12878	blood:	n/a	n/a
47	GATA1	chr1:61542317-61543189	PBDE	blood:	n/a	n/a
48	TCF7L2	chr1:61542587-61543003	PANC-1	pancreas:	n/a	n/a
49	POLR2A	chr1:61542512-61543022	Gliobla	brain:	n/a	n/a
50	MYC	chr1:61542429-61543160	K562	blood:	n/a	chr1:61542722-61542731

No.	Distal block	Cell Line	Cell type
1	chr1:61513320..61528030-chr1:61539604..61553659,57	K562	blood:
2	chr1:61542330..61544925-chr1:61552645..61554391,2	MCF-7	breast:
3	chr1:61512478..61530748-chr1:61539371..61553659,68	K562	blood:
4	chr1:61541387..61547328-chr1:61547444..61551394,9	MCF-7	breast:
5	chr1:61541317..61544049-chr1:61589053..61591943,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INADL-7	chr1:61542791-61544920	NONHSAT003598

Variant related genes	Relation type
NFIA	TF binding region
ENSG00000263380	Chromatin interaction
ENSG00000270742	Chromatin interaction
ENSG00000162599	Chromatin interaction

rs_ID	r²[population]
rs11811322	1.00[AMR][1000 genomes]
rs1694221	1.00[AMR][1000 genomes]
rs1777535	1.00[AMR][1000 genomes]
rs1777542	1.00[AMR][1000 genomes]
rs1779852	1.00[AMR][1000 genomes]
rs1779853	1.00[AMR][1000 genomes]
rs1779859	1.00[AMR][1000 genomes]
rs1779860	1.00[AMR][1000 genomes]
rs1779862	1.00[AMR][1000 genomes]
rs544496	1.00[AMR][1000 genomes]
rs61131876	1.00[AMR][1000 genomes]
rs667553	1.00[AMR][1000 genomes]
rs72911911	1.00[AMR][1000 genomes]
rs72911916	1.00[AMR][1000 genomes]
rs72911921	1.00[AMR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61541600-61544000	Active TSS	HepG2	liver
2	chr1:61541800-61544000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr1:61541800-61544000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr1:61541800-61544000	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr1:61542000-61544000	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr1:61542000-61544000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr1:61542000-61544000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:61542000-61544000	Active TSS	Ovary	ovary
9	chr1:61542000-61544000	Active TSS	Rectal Smooth Muscle	rectum
10	chr1:61542000-61544400	Active TSS	Thymus	Thymus
11	chr1:61542000-61544800	Active TSS	Right Atrium	heart
12	chr1:61542200-61543000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr1:61542200-61543000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr1:61542200-61543000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr1:61542200-61543000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr1:61542200-61543000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:61542200-61543800	Active TSS	H9 Cell Line	embryonic stem cell
18	chr1:61542200-61544000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:61542200-61544000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:61542200-61544000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr1:61542200-61544000	Active TSS	Brain Cingulate Gyrus	brain
22	chr1:61542200-61544000	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr1:61542200-61544000	Active TSS	Placenta	Placenta
24	chr1:61542200-61544000	Active TSS	A549	lung
25	chr1:61542200-61544200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:61542200-61544200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:61542200-61544200	Active TSS	Aorta	Aorta
28	chr1:61542200-61544200	Active TSS	Fetal Intestine Large	intestine
29	chr1:61542200-61544200	Active TSS	Psoas Muscle	Psoas
30	chr1:61542200-61544200	Active TSS	Right Ventricle	heart
31	chr1:61542200-61544200	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr1:61542200-61544400	Active TSS	Colonic Mucosa	Colon
33	chr1:61542200-61544400	Active TSS	Fetal Muscle Leg	muscle
34	chr1:61542400-61543000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:61542400-61543000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
36	chr1:61542400-61543000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr1:61542400-61543000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:61542400-61543200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:61542400-61543200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr1:61542400-61543200	Active TSS	Gastric	stomach
41	chr1:61542400-61543200	Active TSS	Lung	lung
42	chr1:61542400-61543200	Active TSS	Pancreas	Pancrea
43	chr1:61542400-61543600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:61542400-61543600	Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr1:61542400-61543600	Active TSS	Placenta Amnion	Placenta Amnion
46	chr1:61542400-61543800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr1:61542400-61543800	Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr1:61542400-61543800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr1:61542400-61543800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:61542400-61543800	Active TSS	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links