Variant report

Variant	rs1779208
Chromosome Location	chr10:18515041-18515042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1277752	0.87[ASN][1000 genomes]
rs1539681	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1757219	0.85[ASN][1000 genomes]
rs1757220	0.85[ASN][1000 genomes]
rs1757223	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1779211	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1779214	0.82[ASN][1000 genomes]
rs1779215	0.85[ASN][1000 genomes]
rs1779216	0.85[ASN][1000 genomes]
rs1936442	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2489200	0.85[ASN][1000 genomes]
rs2489201	0.83[ASN][1000 genomes]
rs7896607	0.85[ASN][1000 genomes]
rs7905454	0.85[ASN][1000 genomes]
rs7917760	0.85[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18511200-18520400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:18511400-18516200	Weak transcription	Fetal Heart	heart
3	chr10:18512400-18518400	Weak transcription	NHLF	lung
4	chr10:18513600-18515400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:18513600-18515400	Enhancers	Ovary	ovary
6	chr10:18514000-18518800	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:18514000-18522400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:18514000-18522800	Weak transcription	Esophagus	oesophagus
9	chr10:18514400-18518200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:18514400-18524400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:18514400-18525600	Weak transcription	Fetal Lung	lung
12	chr10:18514400-18526600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:18514600-18519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:18514800-18516200	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links