Variant report

Variant	rs1779211
Chromosome Location	chr10:18514120-18514121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1277752	0.88[ASN][1000 genomes]
rs1539681	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1757219	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1757220	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1757223	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1757225	0.81[AMR][1000 genomes]
rs1779208	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1779214	0.83[ASN][1000 genomes]
rs1779215	0.87[ASN][1000 genomes]
rs1779216	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1936442	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2250996	0.81[AMR][1000 genomes]
rs2489200	0.87[ASN][1000 genomes]
rs2489201	0.84[ASN][1000 genomes]
rs7896607	0.87[ASN][1000 genomes]
rs7905454	0.87[ASN][1000 genomes]
rs7917760	0.87[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18511200-18520400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:18511400-18516200	Weak transcription	Fetal Heart	heart
3	chr10:18512400-18518400	Weak transcription	NHLF	lung
4	chr10:18513000-18514600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:18513400-18514400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:18513400-18514400	Enhancers	Rectal Smooth Muscle	rectum
7	chr10:18513600-18514400	Enhancers	Stomach Smooth Muscle	stomach
8	chr10:18513600-18515400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:18513600-18515400	Enhancers	Ovary	ovary
10	chr10:18513800-18514400	Enhancers	Fetal Lung	lung
11	chr10:18514000-18514600	Weak transcription	Fetal Stomach	stomach
12	chr10:18514000-18518800	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:18514000-18522400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:18514000-18522800	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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