Variant report

Variant	rs7905454
Chromosome Location	chr10:18511947-18511948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11013065	0.82[AMR][1000 genomes]
rs1539681	0.87[ASN][1000 genomes]
rs1757219	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1757220	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1757223	0.87[ASN][1000 genomes]
rs1779208	0.85[ASN][1000 genomes]
rs1779211	0.87[ASN][1000 genomes]
rs1779214	0.88[ASN][1000 genomes]
rs1779215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779216	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779217	0.84[AMR][1000 genomes]
rs1936442	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2489200	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489201	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7893163	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7896607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914364	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7917760	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18502400-18513600	Weak transcription	Right Ventricle	heart
2	chr10:18504800-18513400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:18505400-18513400	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:18506000-18512800	Weak transcription	Fetal Lung	lung
5	chr10:18506200-18513600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:18506800-18513600	Weak transcription	Pancreas	Pancrea
7	chr10:18507000-18513600	Weak transcription	Ovary	ovary
8	chr10:18508600-18513000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:18508800-18512400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:18508800-18513200	Weak transcription	Brain Anterior Caudate	brain
11	chr10:18509800-18513600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:18510200-18513600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:18511200-18520400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:18511400-18516200	Weak transcription	Fetal Heart	heart
15	chr10:18511800-18512200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:18511800-18512200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:18511800-18512400	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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