Variant report

Variant	rs2489201
Chromosome Location	chr10:18510448-18510449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1539681	0.84[ASN][1000 genomes]
rs1757219	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1757220	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1757223	0.84[ASN][1000 genomes]
rs1779208	0.83[ASN][1000 genomes]
rs1779211	0.84[ASN][1000 genomes]
rs1779214	0.85[ASN][1000 genomes]
rs1779215	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779216	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1936442	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2489200	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7893163	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7896607	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7905454	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914364	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7917760	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18499200-18511000	Weak transcription	Aorta	Aorta
2	chr10:18502400-18513600	Weak transcription	Right Ventricle	heart
3	chr10:18504800-18513400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:18505400-18513400	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:18506000-18512800	Weak transcription	Fetal Lung	lung
6	chr10:18506200-18513600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:18506800-18513600	Weak transcription	Pancreas	Pancrea
8	chr10:18507000-18513600	Weak transcription	Ovary	ovary
9	chr10:18508600-18511800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:18508600-18513000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:18508800-18511800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:18508800-18512400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:18508800-18513200	Weak transcription	Brain Anterior Caudate	brain
14	chr10:18509600-18511400	Enhancers	Fetal Heart	heart
15	chr10:18509800-18513600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:18510200-18513600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:18510400-18511200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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