Variant report

Variant	rs17865002
Chromosome Location	chr7:127020127-127020128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:126928738..126930277-chr7:127019049..127021914,2	K562	blood:
2	chr7:127018019..127020771-chr7:127224499..127226932,2	MCF-7	breast:
3	chr7:127018682..127020329-chr7:127027306..127029620,2	MCF-7	breast:
4	7:127018926-127031401..7:127225864-127233104	GM12878	blood:
5	chr7:127018538..127020853-chr7:127028669..127033482,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179562	Chromatin interaction
ENSG00000106328	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000004059	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17864970	1.00[YRI][hapmap]
rs17865001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865287	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865875	1.00[YRI][hapmap]
rs17866468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866821	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866822	1.00[YRI][hapmap]
rs17867128	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867143	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869262	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6967758	1.00[YRI][hapmap]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
2	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
3	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
5	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
6	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
7	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:126995400-127022600	Strong transcription	Dnd41	blood
9	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
11	chr7:126998200-127020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:126999600-127023200	Weak transcription	Small Intestine	intestine
15	chr7:127001600-127023200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
18	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
19	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
20	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
21	chr7:127001600-127031400	Weak transcription	Gastric	stomach
22	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
24	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
25	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:127011800-127023200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:127012800-127020600	Strong transcription	Primary B cells from peripheral blood	blood
29	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
30	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:127014600-127022600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr7:127014600-127027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:127014800-127023400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:127014800-127027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:127015000-127020200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:127015000-127020600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:127015000-127022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr7:127015000-127022600	Weak transcription	Fetal Muscle Leg	muscle
40	chr7:127015000-127023200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr7:127015000-127023200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr7:127015000-127023400	Weak transcription	NHDF-Ad	bronchial
43	chr7:127015000-127025200	Weak transcription	NHLF	lung
44	chr7:127015000-127026600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr7:127015000-127027400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:127015000-127027400	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:127015000-127027600	Weak transcription	Left Ventricle	heart
48	chr7:127015000-127027600	Weak transcription	Ovary	ovary
49	chr7:127015000-127028800	Weak transcription	Psoas Muscle	Psoas
50	chr7:127015000-127030400	Weak transcription	Brain Cingulate Gyrus	brain

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