Variant report

Variant	rs17869262
Chromosome Location	chr7:127036076-127036077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:127036035-127036101	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126980512..126983635-chr7:127032976..127036223,3	K562	blood:
2	chr7:126991047..126993006-chr7:127034690..127037263,2	K562	blood:
3	chr7:127035320..127037674-chr7:127043618..127045228,2	K562	blood:
4	chr7:127031701..127034064-chr7:127034316..127037068,3	MCF-7	breast:
5	chr7:127030420..127033990-chr7:127034934..127040808,8	MCF-7	breast:
6	chr7:126987437..126990960-chr7:127034932..127038867,5	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17864970	1.00[YRI][hapmap]
rs17865001	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865002	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865287	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865875	1.00[YRI][hapmap]
rs17866468	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866821	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866822	1.00[YRI][hapmap]
rs17867128	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867143	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869288	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869516	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875050	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946954	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6967758	1.00[YRI][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127033800-127036200	Weak transcription	K562	blood
2	chr7:127034000-127036200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:127034200-127036200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:127034200-127036200	Weak transcription	GM12878-XiMat	blood
5	chr7:127034200-127036400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:127036000-127036800	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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