Variant report

Variant	rs17869516
Chromosome Location	chr7:127052349-127052350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17865001	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865002	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866821	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869262	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875050	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127045400-127053000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr7:127046600-127058400	Weak transcription	Pancreas	Pancrea
3	chr7:127049200-127052800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr7:127049200-127053200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:127049400-127052800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:127049400-127053000	Weak transcription	Primary T cells from cord blood	blood
7	chr7:127049600-127053000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:127049800-127052400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:127050000-127052800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:127050600-127053200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:127051400-127054000	Enhancers	Primary B cells from cord blood	blood
12	chr7:127051400-127058600	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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