Variant report

Variant	rs6946954
Chromosome Location	chr7:127024190-127024191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127022197..127024993-chr7:127070066..127072531,2	K562	blood:
2	7:127018926-127031401..7:127225864-127233104	GM12878	blood:
3	chr7:127023763..127025561-chr7:127227150..127229629,2	K562	blood:

Variant related genes	Relation type
ENSG00000004059	Chromatin interaction
ENSG00000106328	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17865001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865287	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866821	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867128	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867143	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
2	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
4	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
5	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
6	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
13	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
14	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
15	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
16	chr7:127001600-127031400	Weak transcription	Gastric	stomach
17	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
19	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
20	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
23	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:127014600-127027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:127014800-127027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:127015000-127025200	Weak transcription	NHLF	lung
28	chr7:127015000-127026600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:127015000-127027400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:127015000-127027400	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:127015000-127027600	Weak transcription	Left Ventricle	heart
32	chr7:127015000-127027600	Weak transcription	Ovary	ovary
33	chr7:127015000-127028800	Weak transcription	Psoas Muscle	Psoas
34	chr7:127015000-127030400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:127015000-127031000	Weak transcription	Brain Anterior Caudate	brain
36	chr7:127015000-127031200	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:127015000-127031200	Weak transcription	Thymus	Thymus
38	chr7:127015000-127031200	Weak transcription	HSMMtube	muscle
39	chr7:127015000-127031400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:127015000-127031400	Weak transcription	Fetal Kidney	kidney
41	chr7:127015000-127031400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr7:127015000-127031400	Weak transcription	Lung	lung
43	chr7:127015200-127027200	Weak transcription	Fetal Intestine Large	intestine
44	chr7:127015200-127028200	Weak transcription	Fetal Lung	lung
45	chr7:127015200-127031200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:127017600-127024800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:127017600-127025200	Weak transcription	Placenta	Placenta
48	chr7:127018200-127025200	Weak transcription	Liver	Liver
49	chr7:127018200-127031200	Weak transcription	Brain Germinal Matrix	brain
50	chr7:127019200-127024200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links