Variant report
| Variant | rs17866468 |
|---|---|
| Chromosome Location | chr7:126981792-126981793 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126971126..126973054-chr7:126980938..126983208,2 | K562 | blood: | |
| 2 | chr7:126980512..126983635-chr7:127032976..127036223,3 | K562 | blood: | |
| 3 | chr7:126981517..126984054-chr7:127032244..127034506,2 | MCF-7 | breast: | |
| 4 | chr7:126979918..126982217-chr7:126984570..126987487,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000048405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs17865001 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865002 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865287 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17866821 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17867128 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17867143 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17869262 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17869288 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17869516 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17875050 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6946954 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
