Variant report

Variant	rs17881362
Chromosome Location	chr11:64975157-64975158
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64974957-64975166	K562	blood:	n/a	n/a
2	POLR2A	chr11:64975157-64975327	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64936336..64940512-chr11:64971358..64975789,6	K562	blood:
2	chr11:64879391..64881748-chr11:64974294..64977624,3	K562	blood:
3	chr11:64884257..64886940-chr11:64972599..64976618,4	MCF-7	breast:
4	chr11:64973188..64975760-chr11:65189553..65191524,2	K562	blood:
5	chr11:64970739..64974089-chr11:64974208..64977287,3	MCF-7	breast:
6	chr11:64900971..64903400-chr11:64973155..64976950,3	MCF-7	breast:
7	chr11:64974156..64975734-chr11:65027744..65029492,2	MCF-7	breast:

No data

Variant related genes	Relation type
CAPN1	TF binding region
ENSG00000245532	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000162298	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56941891	1.00[AMR][1000 genomes]
rs58175858	1.00[AMR][1000 genomes]
rs60560944	1.00[AMR][1000 genomes]
rs73482232	1.00[AMR][1000 genomes]
rs73482946	1.00[AMR][1000 genomes]
rs73482948	1.00[AMR][1000 genomes]
rs73482966	1.00[AMR][1000 genomes]
rs73482968	1.00[AMR][1000 genomes]
rs73482973	1.00[AMR][1000 genomes]
rs73482979	1.00[AMR][1000 genomes]
rs73484946	1.00[AMR][1000 genomes]
rs73484983	1.00[AMR][1000 genomes]
rs73484993	1.00[AMR][1000 genomes]
rs7946909	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64950600-64992400	Weak transcription	Right Atrium	heart
2	chr11:64951000-64976200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:64951200-64976200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:64951400-64979200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:64951600-64976400	Weak transcription	Fetal Brain Male	brain
6	chr11:64951600-64979600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:64952400-64980200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:64952400-64992800	Weak transcription	Fetal Heart	heart
9	chr11:64952800-64978000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:64953600-64978600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:64957600-64975600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:64962800-64976800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:64963000-64975400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:64964200-64980000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:64964400-64979800	Strong transcription	Fetal Stomach	stomach
16	chr11:64964400-64981000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:64965000-64975800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:64965600-64977800	Strong transcription	Fetal Thymus	thymus
19	chr11:64969400-64976800	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:64969400-64980000	Strong transcription	HMEC	breast
21	chr11:64969800-64979400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:64969800-64980000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:64970000-64975400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:64970000-64979200	Strong transcription	Adipose Nuclei	Adipose
25	chr11:64970000-64979600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:64970000-64979600	Strong transcription	Thymus	Thymus
27	chr11:64970000-64979800	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:64970000-64980200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr11:64970200-64975600	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr11:64970200-64979600	Strong transcription	Fetal Brain Female	brain
31	chr11:64970200-64979600	Strong transcription	NHEK	skin
32	chr11:64970200-64979800	Strong transcription	Ovary	ovary
33	chr11:64970400-64979800	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:64970800-64975600	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr11:64970800-64977400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:64971000-64977600	Strong transcription	GM12878-XiMat	blood
37	chr11:64971000-64980000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:64971000-64980200	Strong transcription	Gastric	stomach
39	chr11:64971200-64975600	Strong transcription	Duodenum Mucosa	Duodenum
40	chr11:64971200-64978600	Strong transcription	Primary T cells from cord blood	blood
41	chr11:64971400-64975800	Strong transcription	Spleen	Spleen
42	chr11:64971400-64979800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:64971400-64979800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:64971400-64980000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:64971400-64980000	Strong transcription	Pancreas	Pancrea
46	chr11:64971400-64980200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:64971400-64980200	Strong transcription	NHLF	lung
48	chr11:64971600-64979400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:64971600-64979600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr11:64971600-64980000	Strong transcription	Right Ventricle	heart

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