Variant report

Variant	rs58175858
Chromosome Location	chr11:65020668-65020669
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65017523..65022048-chr11:65027523..65031250,6	K562	blood:
2	chr11:64970444..64972376-chr11:65020146..65021721,2	MCF-7	breast:
3	chr11:65019811..65024009-chr11:65028020..65030631,3	MCF-7	breast:
4	chr11:64977079..64978948-chr11:65020056..65023023,2	MCF-7	breast:
5	chr11:64971026..64972779-chr11:65020201..65021719,2	MCF-7	breast:
6	chr11:64877392..64880177-chr11:65018001..65021656,4	MCF-7	breast:
7	chr11:64883265..64885368-chr11:65018165..65021241,3	K562	blood:
8	chr11:64981438..64983077-chr11:65020117..65022507,2	MCF-7	breast:
9	chr11:64883445..64885368-chr11:65019604..65021241,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000149823	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000014138	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17881362	1.00[AMR][1000 genomes]
rs4149847	0.94[AFR][1000 genomes]
rs56941891	1.00[AMR][1000 genomes]
rs60560944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482946	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482948	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482966	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946909	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv976461	chr11:65000821-65054446	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65015200-65028600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:65016400-65028600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:65018400-65028600	Weak transcription	Liver	Liver
4	chr11:65019600-65028400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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