Variant report

Variant	rs56941891
Chromosome Location	chr11:64993733-64993734
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64988866..64990383-chr11:64992045..64994203,2	K562	blood:
2	chr11:64901949..64903595-chr11:64993216..64995733,2	MCF-7	breast:
3	chr11:64992394..64994754-chr11:64999110..65001538,2	MCF-7	breast:
4	chr11:64986935..64989872-chr11:64992647..64995488,2	MCF-7	breast:
5	chr11:64980421..64987264-chr11:64991140..64994999,6	K562	blood:
6	chr11:64980421..64983038-chr11:64992029..64994539,2	K562	blood:
7	chr11:64983043..64986391-chr11:64991756..64994999,4	K562	blood:
8	chr11:64490664..64492722-chr11:64991494..64993936,2	MCF-7	breast:
9	chr11:64899551..64901557-chr11:64993119..64995072,2	K562	blood:
10	chr11:64993421..64996189-chr11:64998607..65001730,3	K562	blood:
11	chr11:64982257..64984604-chr11:64993334..64996229,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000162298	Chromatin interaction
ENSG00000197847	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17881362	1.00[AMR][1000 genomes]
rs58175858	1.00[AMR][1000 genomes]
rs60560944	1.00[AMR][1000 genomes]
rs73482232	1.00[AMR][1000 genomes]
rs73482946	1.00[AMR][1000 genomes]
rs73482948	1.00[AMR][1000 genomes]
rs73482966	1.00[AMR][1000 genomes]
rs73482968	1.00[AMR][1000 genomes]
rs73482973	1.00[AMR][1000 genomes]
rs73482979	1.00[AMR][1000 genomes]
rs73484946	1.00[AMR][1000 genomes]
rs73484983	1.00[AMR][1000 genomes]
rs73484993	1.00[AMR][1000 genomes]
rs7946909	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64977400-64998400	Weak transcription	Small Intestine	intestine
2	chr11:64992200-64993800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr11:64992200-64994000	Enhancers	Stomach Mucosa	stomach
4	chr11:64992600-64993800	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr11:64992600-64993800	Flanking Active TSS	Osteobl	bone
6	chr11:64992600-64994000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr11:64992600-64994000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:64992800-64993800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr11:64992800-64993800	Active TSS	Primary T cells from cord blood	blood
10	chr11:64992800-64993800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr11:64992800-64993800	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr11:64992800-64993800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
13	chr11:64992800-64993800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr11:64992800-64993800	Flanking Active TSS	HMEC	breast
15	chr11:64992800-64993800	Flanking Active TSS	NHEK	skin
16	chr11:64992800-64994000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:64992800-64994000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:64992800-64994000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:64992800-64994000	Active TSS	Rectal Smooth Muscle	rectum
20	chr11:64992800-64994000	Flanking Active TSS	GM12878-XiMat	blood
21	chr11:64992800-64994000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr11:64993000-64993800	Active TSS	H1 Cell Line	embryonic stem cell
23	chr11:64993000-64993800	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr11:64993000-64993800	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
25	chr11:64993000-64993800	Active TSS	Brain Substantia Nigra	brain
26	chr11:64993000-64993800	Flanking Active TSS	Colonic Mucosa	Colon
27	chr11:64993000-64994000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:64993000-64994000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr11:64993200-64993800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:64993200-64993800	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr11:64993200-64993800	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr11:64993200-64993800	Active TSS	NHDF-Ad	bronchial
33	chr11:64993200-64994000	Flanking Bivalent TSS/Enh	HepG2	liver
34	chr11:64993400-64993800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:64993400-64993800	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr11:64993400-64993800	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr11:64993400-64993800	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr11:64993400-64993800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr11:64993400-64993800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr11:64993400-64993800	Active TSS	Right Atrium	heart
41	chr11:64993400-65000000	Weak transcription	A549	lung
42	chr11:64993600-64993800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
43	chr11:64993600-64993800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:64993600-64993800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:64993600-64993800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:64993600-64993800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:64993600-64993800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:64993600-64993800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr11:64993600-64993800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
50	chr11:64993600-64993800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links