Variant report

Variant	rs73482966
Chromosome Location	chr11:65018011-65018012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65017523..65022048-chr11:65027523..65031250,6	K562	blood:
2	chr11:64971963..64972869-chr11:65017556..65018409,4	MCF-7	breast:
3	chr11:64973071..64973769-chr11:65017890..65018488,2	MCF-7	breast:
4	chr11:64971198..64974258-chr11:65016139..65019477,3	MCF-7	breast:
5	chr11:64976347..64977176-chr11:65017840..65018342,2	MCF-7	breast:
6	chr11:65017012..65019675-chr11:65037350..65038889,2	K562	blood:
7	chr11:64877734..64880376-chr11:65016575..65018414,2	K562	blood:
8	chr11:64990436..64992901-chr11:65015967..65018929,2	MCF-7	breast:
9	chr11:64992795..64993731-chr11:65017504..65018445,4	MCF-7	breast:
10	chr11:64972189..64972872-chr11:65017596..65018417,4	MCF-7	breast:
11	chr11:64877392..64880177-chr11:65018001..65021656,4	MCF-7	breast:
12	chr11:65017589..65019451-chr11:65025689..65027277,2	MCF-7	breast:
13	chr11:64992503..64993651-chr11:65017553..65018631,3	K562	blood:
14	chr11:64972159..64972916-chr11:65017546..65018434,2	K562	blood:
15	chr11:64881935..64884142-chr11:65015937..65018143,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000254501	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000149823	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17881362	1.00[AMR][1000 genomes]
rs4149847	0.88[AFR][1000 genomes]
rs56941891	1.00[AMR][1000 genomes]
rs58175858	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60560944	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482232	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482946	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482948	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482973	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482979	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484946	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946909	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv976461	chr11:65000821-65054446	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65015200-65028600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:65016400-65028600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:65017800-65018200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:65017800-65018400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:65017800-65018400	Enhancers	Liver	Liver
6	chr11:65018000-65018200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:65018000-65018200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:65018000-65018200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:65018000-65018400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:65018000-65018400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:65018000-65018400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:65018000-65018600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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