Variant report

Variant	rs73482948
Chromosome Location	chr11:65004951-65004952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17881362	1.00[AMR][1000 genomes]
rs4149847	0.83[AFR][1000 genomes]
rs56941891	1.00[AMR][1000 genomes]
rs58175858	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60560944	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482232	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482966	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482979	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484946	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484983	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484993	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946909	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv976461	chr11:65000821-65054446	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64993600-65011000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:64993800-65010800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:64993800-65010800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:64994200-65007200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:64997800-65009400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:65004000-65009200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:65004200-65005800	Enhancers	HepG2	liver
8	chr11:65004400-65009000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:65004600-65006200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:65004600-65011200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:65004800-65005200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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