Variant report

Variant	rs1807194
Chromosome Location	chr9:103214766-103214767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103213146..103215869-chr9:103217613..103219116,2	K562	blood:
2	chr9:103199462..103202264-chr9:103213712..103215287,2	MCF-7	breast:
3	chr9:103109668..103111335-chr9:103213495..103215369,2	K562	blood:
4	chr9:103197970..103201753-chr9:103212860..103216897,4	K562	blood:
5	chr9:103170121..103172930-chr9:103214537..103217403,2	K562	blood:
6	chr9:103205043..103207863-chr9:103213168..103215461,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000478	1.00[EUR][1000 genomes]
rs1136616	1.00[EUR][1000 genomes]
rs2417177	1.00[EUR][1000 genomes]
rs4260947	1.00[EUR][1000 genomes]
rs5018733	1.00[EUR][1000 genomes]
rs61177580	1.00[EUR][1000 genomes]
rs7043406	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73657325	1.00[EUR][1000 genomes]
rs73657327	1.00[EUR][1000 genomes]
rs73657329	1.00[EUR][1000 genomes]
rs7858132	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103190600-103224600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:103190800-103217600	Weak transcription	Fetal Intestine Large	intestine
3	chr9:103191800-103217600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:103191800-103228000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:103196200-103226400	Weak transcription	Psoas Muscle	Psoas
6	chr9:103200000-103217000	Weak transcription	K562	blood
7	chr9:103201200-103215600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:103201600-103215400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:103202000-103215800	Weak transcription	Fetal Thymus	thymus
10	chr9:103202800-103217400	Weak transcription	Right Ventricle	heart
11	chr9:103203800-103215600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:103203800-103217400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:103204000-103216800	Strong transcription	Osteobl	bone
14	chr9:103204600-103221200	Weak transcription	Fetal Kidney	kidney
15	chr9:103205000-103216800	Weak transcription	Fetal Intestine Small	intestine
16	chr9:103206000-103217000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:103206800-103216200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr9:103206800-103217000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:103207000-103217400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:103207000-103227400	Weak transcription	Brain Anterior Caudate	brain
21	chr9:103207600-103215800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr9:103207600-103216600	Weak transcription	Hela-S3	cervix
23	chr9:103207800-103215000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:103208400-103217400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:103208800-103227200	Weak transcription	Brain Angular Gyrus	brain
26	chr9:103208800-103227800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr9:103209000-103217400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:103209600-103216200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr9:103209600-103217800	Weak transcription	HepG2	liver
30	chr9:103209600-103227400	Weak transcription	Brain Substantia Nigra	brain
31	chr9:103210000-103217200	Strong transcription	NHLF	lung
32	chr9:103210000-103217800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:103210200-103214800	Weak transcription	Brain Hippocampus Middle	brain
34	chr9:103210200-103218200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:103210400-103218400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:103210400-103219200	Strong transcription	HSMM	muscle
37	chr9:103210600-103216000	Strong transcription	HUVEC	blood vessel
38	chr9:103210600-103216800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr9:103210600-103217800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr9:103210800-103216600	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr9:103211600-103218800	Strong transcription	NHDF-Ad	bronchial
42	chr9:103212000-103217800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr9:103212200-103216200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:103212600-103216600	Strong transcription	NH-A	brain
45	chr9:103212600-103217400	Weak transcription	GM12878-XiMat	blood
46	chr9:103212800-103215000	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr9:103212800-103215000	Strong transcription	Adipose Nuclei	Adipose
48	chr9:103212800-103216000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr9:103212800-103216600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr9:103212800-103216600	Strong transcription	Fetal Muscle Trunk	muscle

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