Variant report

Variant	rs4260947
Chromosome Location	chr9:103363774-103363775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:103363051..103364166-chr9:103997474..103998411,6	MCF-7	breast:
2	chr9:103363453..103364061-chr9:103452467..103452969,2	MCF-7	breast:
3	chr9:103363089..103366004-chr9:103369359..103371532,2	K562	blood:
4	chr9:103363061..103364025-chr9:104073627..104074488,4	MCF-7	breast:
5	chr9:103362677..103364065-chr9:104073640..104074719,9	MCF-7	breast:
6	chr9:103363137..103364168-chr9:104073197..104074607,7	K562	blood:
7	chr9:103363485..103364212-chr9:103881258..103882118,3	MCF-7	breast:
8	chr9:103362495..103364857-chr9:103444927..103447653,2	MCF-7	breast:

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000478	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1807194	1.00[EUR][1000 genomes]
rs2417177	1.00[EUR][1000 genomes]
rs5018733	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs56225676	1.00[AMR][1000 genomes]
rs61177580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043406	1.00[EUR][1000 genomes]
rs73657325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73657327	1.00[EUR][1000 genomes]
rs73657329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7858132	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv893624	chr9:103351931-103416553	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103361200-103372800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:103361600-103363800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr9:103361600-103364400	Enhancers	Fetal Muscle Leg	muscle
4	chr9:103361800-103363800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:103361800-103363800	Weak transcription	Lung	lung
6	chr9:103361800-103364600	Weak transcription	Fetal Brain Male	brain
7	chr9:103361800-103364600	Weak transcription	Right Atrium	heart
8	chr9:103361800-103364800	Weak transcription	Brain Anterior Caudate	brain
9	chr9:103361800-103364800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:103361800-103367600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:103362000-103363800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:103362000-103364600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:103362200-103364600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:103362600-103363800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:103362800-103363800	Enhancers	HSMMtube	muscle
16	chr9:103362800-103363800	Enhancers	K562	blood
17	chr9:103362800-103364000	Enhancers	Fetal Muscle Trunk	muscle
18	chr9:103362800-103364000	Enhancers	HSMM	muscle
19	chr9:103363000-103364000	Enhancers	HepG2	liver
20	chr9:103363200-103363800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:103363200-103365200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:103363400-103364400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:103363400-103364800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:103363600-103363800	Enhancers	Brain Angular Gyrus	brain
25	chr9:103363600-103364000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr9:103363600-103364000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:103363600-103364000	Enhancers	Brain Hippocampus Middle	brain
28	chr9:103363600-103364600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:103363600-103364800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:103363600-103365200	Enhancers	HUES6 Cell Line	embryonic stem cell

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