Variant report

Variant	rs7043406
Chromosome Location	chr9:103219207-103219208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103218360..103221839-chr9:103223201..103225768,3	MCF-7	breast:
2	chr9:103216500..103219242-chr9:103223306..103224968,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000478	1.00[EUR][1000 genomes]
rs1136616	1.00[EUR][1000 genomes]
rs1807194	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2417177	1.00[EUR][1000 genomes]
rs4260947	1.00[EUR][1000 genomes]
rs5018733	1.00[EUR][1000 genomes]
rs61177580	1.00[EUR][1000 genomes]
rs73657325	1.00[EUR][1000 genomes]
rs73657327	1.00[EUR][1000 genomes]
rs73657329	1.00[EUR][1000 genomes]
rs7858132	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103190600-103224600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:103191800-103228000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:103196200-103226400	Weak transcription	Psoas Muscle	Psoas
4	chr9:103204600-103221200	Weak transcription	Fetal Kidney	kidney
5	chr9:103207000-103227400	Weak transcription	Brain Anterior Caudate	brain
6	chr9:103208800-103227200	Weak transcription	Brain Angular Gyrus	brain
7	chr9:103208800-103227800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:103209600-103227400	Weak transcription	Brain Substantia Nigra	brain
9	chr9:103214200-103224600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:103214600-103219800	Weak transcription	Gastric	stomach
11	chr9:103214600-103221600	Weak transcription	Lung	lung
12	chr9:103214600-103222600	Weak transcription	Thymus	Thymus
13	chr9:103214600-103224800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:103215000-103220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:103215000-103222800	Weak transcription	Fetal Stomach	stomach
16	chr9:103215200-103221400	Weak transcription	Esophagus	oesophagus
17	chr9:103215200-103224600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:103215600-103221800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:103215600-103227400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:103215600-103231200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:103215800-103224600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:103215800-103227400	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:103216000-103221600	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:103216200-103224600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr9:103216200-103225000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:103216600-103223800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:103216600-103223800	Weak transcription	NH-A	brain
28	chr9:103216600-103224600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr9:103216600-103228400	Weak transcription	Adipose Nuclei	Adipose
30	chr9:103216600-103235000	Weak transcription	Aorta	Aorta
31	chr9:103216800-103220200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr9:103216800-103220600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:103216800-103220800	Weak transcription	Osteobl	bone
34	chr9:103216800-103221800	Weak transcription	HSMMtube	muscle
35	chr9:103216800-103222600	Weak transcription	Primary T cells from cord blood	blood
36	chr9:103216800-103223000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:103216800-103224800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr9:103216800-103225600	Weak transcription	A549	lung
39	chr9:103216800-103227400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:103216800-103227600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:103216800-103227600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr9:103216800-103228600	Weak transcription	Left Ventricle	heart
43	chr9:103216800-103228600	Weak transcription	Pancreas	Pancrea
44	chr9:103216800-103235000	Weak transcription	Fetal Muscle Leg	muscle
45	chr9:103217000-103234800	Weak transcription	Fetal Brain Female	brain
46	chr9:103217200-103220000	Weak transcription	HMEC	breast
47	chr9:103217200-103234800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:103217400-103220000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:103217400-103222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:103217400-103223600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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