Variant report

Variant	rs73657329
Chromosome Location	chr9:103358458-103358459
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103267728..103268488-chr9:103357705..103358523,3	MCF-7	breast:
2	chr9:103358110..103359783-chr9:103360702..103363224,2	MCF-7	breast:
3	chr9:103268207..103270870-chr9:103356475..103358735,2	MCF-7	breast:
4	chr9:103267523..103268486-chr9:103357439..103358632,10	MCF-7	breast:
5	chr9:103356597..103359532-chr9:103359671..103361180,2	K562	blood:
6	chr9:103187168..103189222-chr9:103356564..103358499,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1807194	1.00[EUR][1000 genomes]
rs2417177	1.00[EUR][1000 genomes]
rs4260947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5018733	1.00[EUR][1000 genomes]
rs56225676	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61177580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043406	1.00[EUR][1000 genomes]
rs73657325	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73657327	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7858132	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv893624	chr9:103351931-103416553	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103329600-103360800	Weak transcription	Aorta	Aorta
2	chr9:103331600-103360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:103333600-103360800	Weak transcription	Fetal Brain Male	brain
4	chr9:103343200-103360600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:103346200-103359800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:103348600-103361000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:103348800-103360600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:103349600-103360800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:103349800-103359400	Weak transcription	Brain Germinal Matrix	brain
10	chr9:103350000-103360200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:103350200-103360200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:103350400-103359200	Weak transcription	Fetal Heart	heart
13	chr9:103350400-103360000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:103350600-103360800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:103351000-103360000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:103351000-103360600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:103351600-103360600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:103353400-103360600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:103353600-103360400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:103354000-103360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:103354400-103359600	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:103354400-103360800	Weak transcription	Brain Substantia Nigra	brain
23	chr9:103354600-103360800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:103354800-103360200	Weak transcription	HepG2	liver
25	chr9:103358000-103359600	Weak transcription	HSMM	muscle
26	chr9:103358000-103360000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr9:103358000-103360400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr9:103358000-103360400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:103358000-103360400	Weak transcription	Fetal Lung	lung
30	chr9:103358000-103360600	Weak transcription	Brain Anterior Caudate	brain
31	chr9:103358000-103360600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:103358000-103360600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr9:103358000-103360800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:103358000-103360800	Weak transcription	Fetal Brain Female	brain
35	chr9:103358000-103360800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:103358000-103360800	Weak transcription	HSMMtube	muscle
37	chr9:103358400-103358600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr9:103358400-103359800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:103358400-103360600	Weak transcription	Brain Angular Gyrus	brain
40	chr9:103358400-103360800	Weak transcription	Brain Cingulate Gyrus	brain

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