Variant report

Variant	rs61177580
Chromosome Location	chr9:103353847-103353848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103348301..103352050-chr9:103353631..103357839,4	K562	blood:
2	chr9:103189259..103191094-chr9:103351193..103354003,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1807194	1.00[EUR][1000 genomes]
rs2417177	1.00[EUR][1000 genomes]
rs4260947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5018733	1.00[EUR][1000 genomes]
rs56225676	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043406	1.00[EUR][1000 genomes]
rs73657325	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73657327	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73657329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7858132	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv893624	chr9:103351931-103416553	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103329600-103360800	Weak transcription	Aorta	Aorta
2	chr9:103330000-103357800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:103331600-103360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:103332400-103357600	Weak transcription	Fetal Lung	lung
5	chr9:103333600-103360800	Weak transcription	Fetal Brain Male	brain
6	chr9:103343200-103360600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:103346200-103359800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:103348600-103361000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:103348800-103360600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:103349600-103360800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:103349800-103359400	Weak transcription	Brain Germinal Matrix	brain
12	chr9:103350000-103357600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:103350000-103357600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:103350000-103360200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:103350200-103357600	Weak transcription	Fetal Brain Female	brain
16	chr9:103350200-103360200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:103350400-103357600	Weak transcription	Hela-S3	cervix
18	chr9:103350400-103359200	Weak transcription	Fetal Heart	heart
19	chr9:103350400-103360000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:103350600-103360800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:103350800-103357600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:103351000-103360000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr9:103351000-103360600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:103351200-103357600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:103351400-103354200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr9:103351400-103354400	Enhancers	Brain Hippocampus Middle	brain
27	chr9:103351600-103355600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:103351600-103360600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:103351800-103354000	Enhancers	HSMMtube	muscle
30	chr9:103351800-103354400	Enhancers	Brain Substantia Nigra	brain
31	chr9:103352000-103354000	Enhancers	HSMM	muscle
32	chr9:103352000-103354800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr9:103352200-103354200	Enhancers	Brain Angular Gyrus	brain
34	chr9:103352200-103357800	Weak transcription	A549	lung
35	chr9:103352400-103354600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr9:103352400-103354600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr9:103352800-103354600	Enhancers	Brain Cingulate Gyrus	brain
38	chr9:103353200-103357600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:103353200-103357600	Weak transcription	HUVEC	blood vessel
40	chr9:103353400-103360600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:103353600-103354000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr9:103353600-103354000	Enhancers	Fetal Muscle Leg	muscle
43	chr9:103353600-103356400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr9:103353600-103356400	Weak transcription	NHDF-Ad	bronchial
45	chr9:103353600-103357600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:103353600-103360400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:103353800-103357600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:103353800-103357600	Weak transcription	Brain Anterior Caudate	brain
49	chr9:103353800-103357800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:103353800-103357800	Weak transcription	NH-A	brain

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