Variant report

Variant	rs1807702
Chromosome Location	chr22:23506135-23506136
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:23505806..23510284-chr22:23519945..23523267,5	MCF-7	breast:
2	chr22:23504913..23506632-chr9:133736347..133738132,2	K562	blood:

Variant related genes	Relation type
ENSG00000236794	Chromatin interaction
ENSG00000186716	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10775764	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12484280	0.82[ASN][1000 genomes]
rs1807460	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1807705	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1807706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1987043	0.81[ASN][1000 genomes]
rs2008176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2071431	0.82[ASN][1000 genomes]
rs2071432	0.82[ASN][1000 genomes]
rs2071433	0.82[ASN][1000 genomes]
rs2071435	0.80[ASN][1000 genomes]
rs2071436	0.82[ASN][1000 genomes]
rs2106109	0.88[ASN][1000 genomes]
rs2246716	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2249692	0.87[ASN][1000 genomes]
rs2267006	0.88[AFR][1000 genomes]
rs2267007	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2267008	0.82[ASN][1000 genomes]
rs2267009	0.82[ASN][1000 genomes]
rs2267011	0.82[ASN][1000 genomes]
rs2283804	0.88[AFR][1000 genomes]
rs2301555	0.85[ASN][1000 genomes]
rs2330361	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3761418	0.82[ASN][1000 genomes]
rs3788356	0.82[ASN][1000 genomes]
rs3788357	0.83[ASN][1000 genomes]
rs4552283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4820541	0.93[ASN][1000 genomes]
rs4820542	0.82[ASN][1000 genomes]
rs4822369	0.85[ASN][1000 genomes]
rs55637879	0.88[ASN][1000 genomes]
rs5751593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5751596	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5751597	0.88[ASN][1000 genomes]
rs5751598	0.88[ASN][1000 genomes]
rs5751600	0.86[ASN][1000 genomes]
rs5751601	0.86[ASN][1000 genomes]
rs5751602	0.83[ASN][1000 genomes]
rs5751603	0.83[ASN][1000 genomes]
rs5751606	0.82[ASN][1000 genomes]
rs5751607	0.82[ASN][1000 genomes]
rs5759604	0.91[ASN][1000 genomes]
rs5759607	0.90[ASN][1000 genomes]
rs5759608	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759609	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759611	0.93[ASN][1000 genomes]
rs5759612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5759613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759616	0.93[ASN][1000 genomes]
rs5759617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5759618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759619	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5759620	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759621	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5759623	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5759624	0.90[ASN][1000 genomes]
rs5759628	0.85[ASN][1000 genomes]
rs5759629	0.86[ASN][1000 genomes]
rs5759630	0.86[ASN][1000 genomes]
rs5759631	0.86[ASN][1000 genomes]
rs5759635	0.82[ASN][1000 genomes]
rs5759637	0.82[ASN][1000 genomes]
rs5759638	0.80[ASN][1000 genomes]
rs57983679	0.93[ASN][1000 genomes]
rs5996483	0.82[ASN][1000 genomes]
rs60037456	0.88[ASN][1000 genomes]
rs6519421	0.86[ASN][1000 genomes]
rs713617	0.82[ASN][1000 genomes]
rs713682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7289172	0.86[ASN][1000 genomes]
rs73152631	0.81[ASN][1000 genomes]
rs737818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs737819	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs737820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs756633	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs768514	0.88[ASN][1000 genomes]
rs8142746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9608085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9612244	0.87[ASN][1000 genomes]
rs9612248	0.83[AFR][1000 genomes]
rs9612251	0.90[ASN][1000 genomes]
rs9612252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9612253	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9624047	0.82[ASN][1000 genomes]
rs9624048	0.82[ASN][1000 genomes]
rs9624049	0.80[ASN][1000 genomes]
rs9624051	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915235	chr22:22971768-23650987	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
2	esv3388845	chr22:22973346-23652447	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	100 gene(s)	inside rSNPs	diseases
3	nsv531799	chr22:22993679-23642142	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
4	nsv1061433	chr22:22997799-23649107	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
5	nsv521695	chr22:22998337-23648009	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
6	nsv915236	chr22:22998337-23650987	Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
7	nsv588512	chr22:22998337-23667731	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
8	nsv531800	chr22:23002708-23648163	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
9	nsv916593	chr22:23002709-23648790	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
10	nsv993496	chr22:23002709-23654222	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
11	nsv1067002	chr22:23007167-23643363	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
12	nsv1067324	chr22:23007367-23654223	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
13	nsv533839	chr22:23012013-23643223	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
14	nsv916933	chr22:23012069-23654237	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
15	nsv531801	chr22:23028586-23657804	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
16	nsv531802	chr22:23046186-23627391	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	diseases
17	nsv1060509	chr22:23055148-23648719	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
18	nsv1056324	chr22:23055148-23750989	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
19	nsv1062780	chr22:23060449-23648719	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
20	nsv948942	chr22:23063178-23645718	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
21	nsv1063200	chr22:23097177-23643224	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
22	nsv949250	chr22:23157485-23645718	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
23	nsv1057659	chr22:23400739-24138788	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
24	nsv1058604	chr22:23497533-23545751	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:23488600-23506800	Weak transcription	A549	lung
2	chr22:23490400-23506800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr22:23490400-23522000	Weak transcription	Aorta	Aorta
4	chr22:23491200-23512000	Strong transcription	Right Atrium	heart
5	chr22:23492400-23509000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:23492400-23518000	Weak transcription	Esophagus	oesophagus
7	chr22:23493600-23510800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr22:23493800-23506200	Weak transcription	Colon Smooth Muscle	Colon
9	chr22:23493800-23506200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr22:23498400-23509200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:23500000-23508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr22:23500000-23510800	Weak transcription	Gastric	stomach
13	chr22:23501000-23509200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr22:23501200-23509000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr22:23501400-23508600	Weak transcription	Pancreas	Pancrea
16	chr22:23504600-23506800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr22:23504600-23508800	Enhancers	Liver	Liver
18	chr22:23504800-23509400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr22:23504800-23516200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr22:23505200-23506400	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr22:23505400-23506400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr22:23505400-23506600	Enhancers	Stomach Smooth Muscle	stomach
23	chr22:23505400-23506800	Enhancers	Brain Cingulate Gyrus	brain
24	chr22:23505400-23506800	Enhancers	Fetal Brain Male	brain
25	chr22:23505400-23506800	Enhancers	Ovary	ovary
26	chr22:23505600-23506400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr22:23505600-23506600	Enhancers	Brain Hippocampus Middle	brain
28	chr22:23505600-23506800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr22:23505800-23506200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr22:23505800-23506200	Flanking Active TSS	Fetal Brain Female	brain
31	chr22:23505800-23506400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr22:23505800-23506400	Enhancers	Brain Angular Gyrus	brain
33	chr22:23505800-23506400	Enhancers	Fetal Lung	lung
34	chr22:23505800-23506400	Enhancers	Placenta	Placenta
35	chr22:23505800-23506600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr22:23505800-23506600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr22:23505800-23506600	Enhancers	Adipose Nuclei	Adipose
38	chr22:23505800-23506600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr22:23505800-23506600	Enhancers	Brain Substantia Nigra	brain
40	chr22:23505800-23506800	Enhancers	Brain Anterior Caudate	brain
41	chr22:23505800-23506800	Enhancers	Brain Germinal Matrix	brain
42	chr22:23505800-23506800	Enhancers	Fetal Stomach	stomach
43	chr22:23505800-23506800	Flanking Active TSS	HepG2	liver
44	chr22:23505800-23506800	Enhancers	HSMMtube	muscle
45	chr22:23505800-23507000	Enhancers	Colonic Mucosa	Colon
46	chr22:23505800-23507000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
47	chr22:23505800-23507000	Enhancers	Lung	lung
48	chr22:23505800-23507000	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr22:23506000-23506200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
50	chr22:23506000-23506400	Enhancers	Muscle Satellite Cultured Cells	--

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