Variant report

Variant	rs4822369
Chromosome Location	chr22:23516797-23516798
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:23284666..23285391-chr22:23516333..23517110,2	K562	blood:
2	chr22:23516262..23516815-chr22:23622923..23623913,2	MCF-7	breast:
3	chr22:23515736..23517273-chr22:23623641..23625306,49	K562	blood:
4	chr22:23515800..23516842-chr9:133741551..133742398,3	K562	blood:
5	chr22:23515909..23516826-chr22:23607616..23608143,2	K562	blood:
6	chr22:23515760..23516798-chr22:23622035..23623640,7	K562	blood:
7	chr22:23516682..23520309-chr22:23521388..23525029,5	MCF-7	breast:
8	chr22:23516127..23516832-chr22:23624133..23624667,2	MCF-7	breast:
9	chr22:23515216..23517870-chr9:133765579..133768259,2	K562	blood:
10	chr22:23515967..23516810-chr22:23623905..23625091,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000236794	Chromatin interaction
ENSG00000186716	Chromatin interaction

Extended variants
information (count: 183 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs1051875	0.90[JPT][hapmap]
rs10775764	0.86[ASN][1000 genomes]
rs11704365	0.85[JPT][hapmap]
rs12167308	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12484280	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13054985	0.89[JPT][hapmap]
rs1805058	0.88[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1807460	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1807702	0.85[ASN][1000 genomes]
rs1807705	0.84[ASN][1000 genomes]
rs1807706	0.86[ASN][1000 genomes]
rs1858746	0.84[CEU][hapmap]
rs1989776	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs1989777	0.84[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs1989778	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2008176	0.86[ASN][1000 genomes]
rs2071431	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2071432	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2071433	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2071434	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2071435	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2071436	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2106109	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2157710	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2246716	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs2249692	0.91[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2266995	0.84[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2266997	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs2266998	0.84[CEU][hapmap]
rs2266999	0.88[CEU][hapmap]
rs2267000	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs2267001	0.85[JPT][hapmap]
rs2267003	0.85[JPT][hapmap]
rs2267004	0.90[JPT][hapmap]
rs2267005	0.85[JPT][hapmap]
rs2267006	0.90[JPT][hapmap]
rs2267007	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2267008	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2267009	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2267010	0.81[JPT][hapmap]
rs2267011	0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2283802	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs2283803	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2283804	0.90[JPT][hapmap]
rs2301554	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs2301555	0.90[CHB][hapmap]
rs2330336	0.88[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2330338	0.84[CEU][hapmap]
rs2330361	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3761418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3788342	0.84[JPT][hapmap]
rs3788343	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs3788346	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs3788347	0.90[JPT][hapmap]
rs3788348	0.90[JPT][hapmap]
rs3788350	0.84[JPT][hapmap]
rs3788356	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3788357	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3810614	0.84[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs3827315	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs4552283	0.86[ASN][1000 genomes]
rs4820536	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs4820537	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs4820539	0.90[JPT][hapmap]
rs4820541	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4820542	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4822354	0.84[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap]
rs4822357	0.90[JPT][hapmap]
rs4822359	0.90[JPT][hapmap]
rs4822360	0.90[JPT][hapmap]
rs4822361	0.90[JPT][hapmap]
rs4822362	0.90[JPT][hapmap]
rs55637879	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5751576	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs5751578	0.84[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs5751579	0.83[CEU][hapmap]
rs5751587	0.88[JPT][hapmap]
rs5751589	0.90[JPT][hapmap]
rs5751593	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs5751596	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs5751597	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5751598	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5751600	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5751601	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5751602	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5751603	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5751606	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5751607	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5759593	0.90[JPT][hapmap]
rs5759598	0.90[JPT][hapmap]
rs5759600	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs5759603	0.90[JPT][hapmap]
rs5759604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5759607	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5759608	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs5759609	0.86[ASN][1000 genomes]
rs5759611	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5759612	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs5759613	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs5759614	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs5759615	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs5759616	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5759617	0.86[ASN][1000 genomes]
rs5759618	0.86[ASN][1000 genomes]
rs5759619	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs5759620	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs5759621	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs5759622	0.85[ASN][1000 genomes]
rs5759624	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5759628	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5759629	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5759630	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5759631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5759635	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5759637	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5759638	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57983679	0.84[ASN][1000 genomes]
rs5996483	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6003502	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs6003518	0.90[JPT][hapmap]
rs60037456	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6519411	0.84[CEU][hapmap]
rs6519421	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs713617	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs713682	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7289172	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73152631	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs737818	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs737819	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs737820	0.86[ASN][1000 genomes]
rs739362	0.84[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs756631	0.85[JPT][hapmap]
rs756633	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs768513	0.85[JPT][hapmap]
rs768514	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8138361	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8142746	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs874138	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs885962	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs885963	0.85[JPT][hapmap]
rs885964	0.90[JPT][hapmap]
rs885965	0.81[JPT][hapmap]
rs916583	0.90[JPT][hapmap]
rs916584	0.90[JPT][hapmap]
rs916585	0.87[JPT][hapmap]
rs9608085	0.86[ASN][1000 genomes]
rs9612234	0.90[JPT][hapmap]
rs9612237	0.89[JPT][hapmap]
rs9612244	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9612248	0.85[JPT][hapmap]
rs9612251	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9612252	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9612253	0.86[ASN][1000 genomes]
rs9612257	0.90[JPT][hapmap]
rs9624047	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9624048	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9624049	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9624050	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9624051	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915235	chr22:22971768-23650987	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
2	esv3388845	chr22:22973346-23652447	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	100 gene(s)	inside rSNPs	diseases
3	nsv531799	chr22:22993679-23642142	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
4	nsv1061433	chr22:22997799-23649107	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
5	nsv521695	chr22:22998337-23648009	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
6	nsv915236	chr22:22998337-23650987	Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
7	nsv588512	chr22:22998337-23667731	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
8	nsv531800	chr22:23002708-23648163	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
9	nsv916593	chr22:23002709-23648790	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
10	nsv993496	chr22:23002709-23654222	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
11	nsv1067002	chr22:23007167-23643363	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
12	nsv1067324	chr22:23007367-23654223	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
13	nsv533839	chr22:23012013-23643223	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
14	nsv916933	chr22:23012069-23654237	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
15	nsv531801	chr22:23028586-23657804	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
16	nsv531802	chr22:23046186-23627391	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	diseases
17	nsv1060509	chr22:23055148-23648719	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
18	nsv1056324	chr22:23055148-23750989	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
19	nsv1062780	chr22:23060449-23648719	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
20	nsv948942	chr22:23063178-23645718	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
21	nsv1063200	chr22:23097177-23643224	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
22	nsv949250	chr22:23157485-23645718	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
23	nsv1057659	chr22:23400739-24138788	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
24	nsv1058604	chr22:23497533-23545751	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4822369	BCR///FLJ42953///LOC644165///LOC728468	N/A	lymphoblastoid	RTeQTL
rs4822369	BCR	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:23490400-23522000	Weak transcription	Aorta	Aorta
2	chr22:23492400-23518000	Weak transcription	Esophagus	oesophagus
3	chr22:23506800-23520600	Weak transcription	Brain Anterior Caudate	brain
4	chr22:23509400-23518000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr22:23509800-23518200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:23511000-23517800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:23511000-23517800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr22:23511000-23520800	Weak transcription	Gastric	stomach
9	chr22:23511600-23517600	Weak transcription	Fetal Stomach	stomach
10	chr22:23515800-23518000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr22:23516000-23522000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr22:23516600-23517400	Weak transcription	Placenta	Placenta
13	chr22:23516600-23517800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr22:23516600-23517800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr22:23516600-23517800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr22:23516600-23517800	Weak transcription	Fetal Thymus	thymus
17	chr22:23516600-23517800	Weak transcription	K562	blood
18	chr22:23516600-23518000	Weak transcription	Right Atrium	heart
19	chr22:23516600-23518800	Weak transcription	HepG2	liver
20	chr22:23516600-23520600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr22:23516600-23520600	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links