Variant report

Variant	rs2267009
Chromosome Location	chr22:23530168-23530169
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:23519987..23526245-chr22:23526726..23532791,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186716	Chromatin interaction
ENSG00000236794	Chromatin interaction

Extended variants
information (count: 171 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs1051875	0.84[JPT][hapmap]
rs10775764	0.84[ASN][1000 genomes]
rs12167308	0.95[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs12484280	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13054985	0.83[JPT][hapmap]
rs1805058	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs1807702	0.82[ASN][1000 genomes]
rs1807705	0.82[ASN][1000 genomes]
rs1807706	0.84[ASN][1000 genomes]
rs1858746	0.83[CEU][hapmap]
rs1987043	0.83[AMR][1000 genomes]
rs1989777	0.83[CEU][hapmap]
rs2008176	0.84[ASN][1000 genomes]
rs2071431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2071432	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2071433	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2071434	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2071435	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2071436	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2106109	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2157710	0.84[JPT][hapmap]
rs2246716	0.81[ASN][1000 genomes]
rs2249692	0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2266995	0.83[CEU][hapmap]
rs2266997	0.83[CEU][hapmap];0.84[JPT][hapmap]
rs2266998	0.83[CEU][hapmap];0.83[MEX][hapmap]
rs2266999	0.87[CEU][hapmap]
rs2267004	0.84[JPT][hapmap]
rs2267006	0.84[JPT][hapmap]
rs2267007	0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2267008	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267010	0.85[JPT][hapmap]
rs2267011	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2267012	0.85[JPT][hapmap]
rs2267013	0.89[GIH][hapmap]
rs2267014	0.81[JPT][hapmap]
rs2267016	0.85[GIH][hapmap]
rs2283802	1.00[ASW][hapmap];0.91[CEU][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap]
rs2283803	0.84[JPT][hapmap]
rs2283804	0.84[JPT][hapmap]
rs2301554	0.84[JPT][hapmap]
rs2330336	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs2330338	0.83[CEU][hapmap]
rs2330361	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs3761418	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3788343	0.83[CEU][hapmap]
rs3788347	0.84[JPT][hapmap]
rs3788348	0.84[JPT][hapmap]
rs3788356	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3788357	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3810614	0.83[CEU][hapmap]
rs3827315	0.83[CEU][hapmap]
rs4552283	0.84[ASN][1000 genomes]
rs4820536	0.86[ASW][hapmap];0.87[CEU][hapmap];0.91[MEX][hapmap]
rs4820537	0.84[JPT][hapmap]
rs4820539	0.84[JPT][hapmap]
rs4820541	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4820542	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4822354	0.83[CEU][hapmap]
rs4822357	0.84[JPT][hapmap]
rs4822359	0.84[JPT][hapmap]
rs4822360	0.84[JPT][hapmap]
rs4822361	0.84[JPT][hapmap]
rs4822362	0.84[JPT][hapmap]
rs4822369	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55637879	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5751578	0.83[CEU][hapmap]
rs5751579	0.83[CEU][hapmap];0.91[MEX][hapmap]
rs5751587	0.81[JPT][hapmap]
rs5751589	0.84[JPT][hapmap]
rs5751593	0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs5751596	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs5751597	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5751598	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5751600	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5751601	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5751602	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5751603	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5751606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5751607	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759580	0.87[MEX][hapmap]
rs5759593	0.84[JPT][hapmap]
rs5759598	0.84[JPT][hapmap]
rs5759600	0.84[JPT][hapmap]
rs5759603	0.84[JPT][hapmap]
rs5759604	0.93[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5759607	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5759608	0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs5759609	0.84[ASN][1000 genomes]
rs5759611	0.86[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5759612	0.87[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs5759613	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs5759614	0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs5759615	0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs5759616	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5759617	0.83[ASN][1000 genomes]
rs5759618	0.84[ASN][1000 genomes]
rs5759619	0.85[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs5759620	0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs5759621	0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs5759622	0.82[ASN][1000 genomes]
rs5759624	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5759628	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5759629	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5759630	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5759631	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5759635	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759637	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5759638	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57983679	0.82[ASN][1000 genomes]
rs5996483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6003502	0.83[CEU][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap]
rs6003518	0.84[JPT][hapmap]
rs60037456	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6519411	0.83[CEU][hapmap];0.83[MEX][hapmap]
rs6519421	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs713617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713682	0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7289172	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73152631	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs737818	0.88[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs737819	0.85[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs737820	0.84[ASN][1000 genomes]
rs739362	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs756633	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs768514	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8138361	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8142746	0.85[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs874138	0.86[ASW][hapmap];0.87[CEU][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap]
rs885964	0.84[JPT][hapmap]
rs916583	0.84[JPT][hapmap]
rs916584	0.84[JPT][hapmap]
rs916585	0.81[JPT][hapmap]
rs9608085	0.84[ASN][1000 genomes]
rs9612234	0.84[JPT][hapmap]
rs9612237	0.83[JPT][hapmap]
rs9612244	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9612251	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9612252	0.87[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs9612253	0.84[ASN][1000 genomes]
rs9612257	0.84[JPT][hapmap]
rs9624047	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9624048	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9624049	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9624050	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9624051	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915235	chr22:22971768-23650987	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
2	esv3388845	chr22:22973346-23652447	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	100 gene(s)	inside rSNPs	diseases
3	nsv531799	chr22:22993679-23642142	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
4	nsv1061433	chr22:22997799-23649107	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
5	nsv521695	chr22:22998337-23648009	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
6	nsv915236	chr22:22998337-23650987	Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
7	nsv588512	chr22:22998337-23667731	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
8	nsv531800	chr22:23002708-23648163	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
9	nsv916593	chr22:23002709-23648790	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
10	nsv993496	chr22:23002709-23654222	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
11	nsv1067002	chr22:23007167-23643363	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
12	nsv1067324	chr22:23007367-23654223	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
13	nsv533839	chr22:23012013-23643223	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
14	nsv916933	chr22:23012069-23654237	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
15	nsv531801	chr22:23028586-23657804	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
16	nsv531802	chr22:23046186-23627391	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	diseases
17	nsv1060509	chr22:23055148-23648719	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
18	nsv1056324	chr22:23055148-23750989	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
19	nsv1062780	chr22:23060449-23648719	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
20	nsv948942	chr22:23063178-23645718	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
21	nsv1063200	chr22:23097177-23643224	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
22	nsv949250	chr22:23157485-23645718	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
23	nsv1057659	chr22:23400739-24138788	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
24	nsv1058604	chr22:23497533-23545751	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
25	nsv588598	chr22:23530168-23638025	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2267009	RAB36	cis	parietal	SCAN
rs2267009	BCR///FLJ42953///LOC644165///LOC728468	N/A	lymphoblastoid	RTeQTL
rs2267009	PI4KA	cis	cerebellum	SCAN
rs2267009	BCR	cis	cerebellum	SCAN
rs2267009	BCR	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:23525600-23530200	Enhancers	Primary B cells from peripheral blood	blood
2	chr22:23525800-23530200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr22:23525800-23530600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr22:23526000-23535200	Weak transcription	Stomach Mucosa	stomach
5	chr22:23526000-23546000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr22:23526200-23530200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr22:23526200-23530200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr22:23526200-23531000	Enhancers	Adipose Nuclei	Adipose
9	chr22:23526200-23535800	Weak transcription	Aorta	Aorta
10	chr22:23526200-23546800	Weak transcription	Colonic Mucosa	Colon
11	chr22:23526400-23530200	Enhancers	Fetal Brain Male	brain
12	chr22:23526400-23535000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr22:23526400-23536000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr22:23526400-23560800	Weak transcription	A549	lung
15	chr22:23526800-23530200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr22:23527000-23530800	Genic enhancers	K562	blood
17	chr22:23527000-23535600	Strong transcription	NHEK	skin
18	chr22:23527000-23536000	Weak transcription	HMEC	breast
19	chr22:23527000-23541400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr22:23527000-23547200	Weak transcription	Fetal Kidney	kidney
21	chr22:23527200-23530200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr22:23527200-23530200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr22:23527200-23534400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr22:23527200-23535600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr22:23527200-23535600	Strong transcription	Fetal Stomach	stomach
26	chr22:23527200-23536000	Weak transcription	HSMM	muscle
27	chr22:23527200-23545400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr22:23527200-23547000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr22:23527400-23530200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr22:23527400-23530800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr22:23527400-23533800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr22:23527400-23535200	Weak transcription	Fetal Lung	lung
33	chr22:23527400-23535400	Weak transcription	Hela-S3	cervix
34	chr22:23527400-23545400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr22:23527600-23530200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr22:23527600-23530200	Weak transcription	Esophagus	oesophagus
37	chr22:23527600-23530200	Weak transcription	Spleen	Spleen
38	chr22:23527600-23530600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr22:23527600-23530600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr22:23527600-23533800	Weak transcription	Primary T cells from cord blood	blood
41	chr22:23527600-23533800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr22:23527600-23541200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr22:23527600-23544200	Strong transcription	Fetal Intestine Small	intestine
44	chr22:23528200-23531200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr22:23528400-23530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr22:23528400-23530400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr22:23528400-23531000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr22:23528400-23531000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr22:23528400-23533800	Weak transcription	Pancreas	Pancrea
50	chr22:23528400-23540600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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