Variant report

Variant rs2330338
Chromosome Location chr22:23449955-23449956
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:23416000-23452800 Weak transcription Placenta Amnion Placenta Amnion
2 chr22:23433600-23454400 Weak transcription Primary B cells from cord blood blood
3 chr22:23437600-23458000 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr22:23438600-23452600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr22:23438600-23461800 Enhancers Brain Substantia Nigra brain
6 chr22:23439000-23470400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr22:23439800-23462000 Enhancers Brain Angular Gyrus brain
8 chr22:23441800-23460000 Weak transcription Fetal Brain Male brain
9 chr22:23441800-23470600 Weak transcription Colon Smooth Muscle Colon
10 chr22:23442400-23454600 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr22:23442600-23470600 Weak transcription Pancreas Pancrea
12 chr22:23443400-23450000 Enhancers Brain Inferior Temporal Lobe brain
13 chr22:23443800-23455200 Strong transcription Stomach Smooth Muscle stomach
14 chr22:23444200-23461800 Enhancers Brain Hippocampus Middle brain
15 chr22:23445000-23450200 Strong transcription Fetal Brain Female brain
16 chr22:23446000-23452400 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr22:23447000-23455000 Enhancers Fetal Muscle Leg muscle
18 chr22:23447400-23465200 Bivalent Enhancer Fetal Muscle Trunk muscle
19 chr22:23447600-23452200 Enhancers Gastric stomach
20 chr22:23447600-23456600 Enhancers Brain Cingulate Gyrus brain
21 chr22:23447800-23450800 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr22:23448400-23450400 Enhancers Right Ventricle heart
23 chr22:23448400-23457600 Enhancers HSMMtube muscle
24 chr22:23448600-23450000 Enhancers Left Ventricle heart
25 chr22:23448600-23451000 Enhancers HSMM muscle
26 chr22:23448600-23452200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr22:23449200-23450000 Enhancers Placenta Placenta
28 chr22:23449200-23452800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr22:23449200-23453000 Weak transcription Fetal Intestine Small intestine
30 chr22:23449200-23457000 Weak transcription HepG2 liver
31 chr22:23449400-23452000 Weak transcription Spleen Spleen
32 chr22:23449600-23450000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr22:23449600-23450000 Weak transcription Ovary ovary
34 chr22:23449600-23450200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr22:23449600-23450200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
36 chr22:23449600-23452200 Weak transcription Brain Anterior Caudate brain
37 chr22:23449600-23454200 Weak transcription Fetal Thymus thymus
38 chr22:23449600-23455200 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr22:23449600-23455200 Strong transcription Right Atrium heart
40 chr22:23449800-23450400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr22:23449800-23452800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr22:23449800-23452800 Strong transcription Fetal Stomach stomach
43 chr22:23449800-23454400 Strong transcription Brain Germinal Matrix brain

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