Variant report

Variant rs5759580
Chromosome Location chr22:23422052-23422053
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:23413600-23430400 Weak transcription H9 Cell Line embryonic stem cell
2 chr22:23413600-23440600 Strong transcription Right Atrium heart
3 chr22:23414600-23424600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr22:23415000-23427800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr22:23415800-23430200 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr22:23416000-23452800 Weak transcription Placenta Amnion Placenta Amnion
7 chr22:23416200-23427200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr22:23416800-23422400 Enhancers Spleen Spleen
9 chr22:23416800-23435000 Weak transcription Fetal Brain Male brain
10 chr22:23418200-23423000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr22:23418200-23423400 Enhancers Brain Cingulate Gyrus brain
12 chr22:23418200-23423400 Enhancers Brain Hippocampus Middle brain
13 chr22:23418200-23423400 Enhancers Brain Substantia Nigra brain
14 chr22:23418200-23428600 Weak transcription Primary B cells from cord blood blood
15 chr22:23418600-23423000 Weak transcription Primary B cells from peripheral blood blood
16 chr22:23418600-23423400 Enhancers Brain Angular Gyrus brain
17 chr22:23418800-23422600 Enhancers Brain Anterior Caudate brain
18 chr22:23419000-23430400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr22:23419200-23423400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
20 chr22:23419200-23423400 Enhancers Gastric stomach
21 chr22:23419400-23422200 Enhancers Pancreas Pancrea
22 chr22:23419400-23422800 Enhancers Stomach Mucosa stomach
23 chr22:23419400-23424800 Weak transcription Fetal Brain Female brain
24 chr22:23420000-23423400 Enhancers Brain Inferior Temporal Lobe brain
25 chr22:23420400-23430400 Weak transcription Psoas Muscle Psoas
26 chr22:23420600-23422200 Enhancers Liver Liver
27 chr22:23420600-23430200 Weak transcription Stomach Smooth Muscle stomach
28 chr22:23420600-23435000 Weak transcription Brain Germinal Matrix brain
29 chr22:23420800-23437000 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr22:23421000-23423000 Enhancers Hela-S3 cervix
31 chr22:23421000-23430600 Weak transcription Ovary ovary
32 chr22:23421400-23422200 Enhancers Fetal Intestine Large intestine
33 chr22:23421400-23422200 Enhancers Fetal Intestine Small intestine
34 chr22:23421400-23422200 Flanking Active TSS HepG2 liver
35 chr22:23421400-23422800 Enhancers Skeletal Muscle Female skeletal muscle
36 chr22:23421400-23423000 Enhancers Skeletal Muscle Male skeletal muscle
37 chr22:23421400-23424800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
38 chr22:23421600-23424800 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr22:23422000-23422400 Enhancers HSMMtube muscle

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