Variant report

Variant	rs182269
Chromosome Location	chr1:165436456-165436457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs172260	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs185903	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs185907	0.92[EUR][1000 genomes]
rs2553638	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs285414	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285417	0.90[EUR][1000 genomes]
rs285418	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs285419	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs285420	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2859731	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4657448	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs182269	CREG1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165433600-165436800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:165434600-165439600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:165434800-165437400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:165434800-165439200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:165435000-165437200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:165435400-165437000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:165435400-165437200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:165435600-165436600	Weak transcription	Brain Anterior Caudate	brain
9	chr1:165435600-165437200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:165435800-165437400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:165436000-165437000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:165436400-165437000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:165436400-165437400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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