Variant report

Variant	rs4657448
Chromosome Location	chr1:165446405-165446406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10800127	1.00[JPT][hapmap]
rs11506	1.00[JPT][hapmap]
rs11800476	1.00[JPT][hapmap]
rs172260	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182269	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs185903	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs185907	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553638	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285414	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285417	0.91[EUR][1000 genomes]
rs285418	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285419	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285420	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285484	1.00[ASN][1000 genomes]
rs2859731	0.89[EUR][1000 genomes]
rs72702437	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947508	chr1:165445780-165455520	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4657448	RAB31	trans	lymphoblastoid	seeQTL
rs4657448	FMO9P	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165438600-165453200	Weak transcription	Fetal Heart	heart
2	chr1:165443000-165451400	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:165446400-165451200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:165446400-165451200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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