Variant report

Variant	rs2553638
Chromosome Location	chr1:165436838-165436839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs172260	0.94[EUR][1000 genomes]
rs182269	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs185903	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs185907	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs285414	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs285417	0.91[EUR][1000 genomes]
rs285418	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs285419	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs285420	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2859731	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4657448	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165434600-165439600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:165434800-165437400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:165434800-165439200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:165435000-165437200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:165435400-165437000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:165435400-165437200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:165435600-165437200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:165435800-165437400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:165436000-165437000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:165436400-165437000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:165436400-165437400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr1:165436600-165437200	Enhancers	Brain Anterior Caudate	brain
13	chr1:165436600-165437400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:165436800-165437200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr1:165436800-165438000	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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