Variant report

Variant	rs285420
Chromosome Location	chr1:165439425-165439426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs172260	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs182269	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs185903	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs185907	0.93[EUR][1000 genomes]
rs2553638	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs285414	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs285417	0.91[EUR][1000 genomes]
rs285418	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285419	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859731	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4657448	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165434600-165439600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:165437200-165443400	Weak transcription	Brain Anterior Caudate	brain
3	chr1:165438400-165442400	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:165438600-165453200	Weak transcription	Fetal Heart	heart
5	chr1:165439200-165445600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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