Variant report

Variant	rs185903
Chromosome Location	chr1:165443460-165443461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11506	1.00[JPT][hapmap]
rs11800476	1.00[JPT][hapmap]
rs172260	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182269	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs185907	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553638	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285414	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285417	0.91[EUR][1000 genomes]
rs285418	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285419	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285420	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285484	1.00[ASN][1000 genomes]
rs2859731	0.89[EUR][1000 genomes]
rs4657448	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702437	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333020	chr1:165443046-165443574	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs185903	RAB31	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165438600-165453200	Weak transcription	Fetal Heart	heart
2	chr1:165439200-165445600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:165439600-165445800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:165443000-165451400	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:165443400-165443600	Enhancers	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links