Variant report

Variant	rs1823053
Chromosome Location	chr5:53997352-53997353
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:53991357..53995095-chr5:53995631..53999040,4	K562	blood:
2	chr5:53975288..53977099-chr5:53997227..53999816,2	K562	blood:
3	chr5:53988043..53990652-chr5:53996716..53998540,2	K562	blood:
4	chr5:53996151..53998533-chr5:54037504..54039404,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10940418	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10940419	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12520114	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12654571	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12655150	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12659390	0.96[ASN][1000 genomes]
rs12659671	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2034237	0.99[ASN][1000 genomes]
rs4288089	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4342279	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4376219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4865585	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4865865	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55774545	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56341116	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56399530	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57433496	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57534013	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57569595	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59617154	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60146924	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7735895	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7736032	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7736999	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53987400-53999600	Weak transcription	Pancreas	Pancrea
2	chr5:53987600-53997800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:53990000-53999000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:53990600-53999000	Weak transcription	Right Ventricle	heart
5	chr5:53990800-53998800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:53992600-53998400	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:53992800-53997800	Enhancers	HSMMtube	muscle
8	chr5:53993000-53997600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:53993000-53998400	Weak transcription	Brain Substantia Nigra	brain
10	chr5:53993000-53999000	Weak transcription	Placenta	Placenta
11	chr5:53993200-53998200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:53993200-53998400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:53993200-53998600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:53993400-53998200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:53993400-53998600	Weak transcription	Fetal Muscle Leg	muscle
16	chr5:53993800-53998200	Weak transcription	Colon Smooth Muscle	Colon
17	chr5:53994000-53997800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:53994000-53998800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr5:53994000-53999000	Weak transcription	Fetal Brain Male	brain
20	chr5:53994200-53998800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:53994400-53997800	Enhancers	HSMM	muscle
22	chr5:53994600-53999000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:53994800-53997400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr5:53995000-53998400	Enhancers	NH-A	brain
25	chr5:53995200-53998200	Weak transcription	Fetal Lung	lung
26	chr5:53995800-53999800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr5:53996000-53997600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:53996000-53997800	Weak transcription	Aorta	Aorta
29	chr5:53996000-53999000	Weak transcription	Left Ventricle	heart
30	chr5:53996000-53999600	Enhancers	HMEC	breast
31	chr5:53996200-54000000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:53996400-53999400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr5:53996600-53997800	Enhancers	NHEK	skin
34	chr5:53996600-53998400	Enhancers	NHDF-Ad	bronchial
35	chr5:53996600-53999200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr5:53996600-53999400	Enhancers	NHLF	lung
37	chr5:53996600-53999800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:53996600-53999800	Enhancers	Osteobl	bone
39	chr5:53996800-53997600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr5:53996800-53997600	Enhancers	Hela-S3	cervix
41	chr5:53996800-53998600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:53996800-53999600	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr5:53996800-53999600	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr5:53996800-54001600	Enhancers	Fetal Heart	heart
45	chr5:53997000-53997400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr5:53997000-53997400	Enhancers	Fetal Stomach	stomach
47	chr5:53997000-53997400	Enhancers	Ovary	ovary
48	chr5:53997000-53997400	Enhancers	Right Atrium	heart
49	chr5:53997000-53998400	Enhancers	Adipose Nuclei	Adipose
50	chr5:53997200-53997400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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