Variant report

Variant	rs57433496
Chromosome Location	chr5:54009925-54009926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10940418	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10940419	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12520114	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12654571	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12655150	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12659390	0.86[ASN][1000 genomes]
rs12659671	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1823053	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034237	0.89[ASN][1000 genomes]
rs4288089	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4342279	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4376219	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865585	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4865865	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs55774545	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56341116	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56399530	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57534013	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57569595	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59617154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60146924	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7735895	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736032	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7736999	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54009000-54010600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:54009200-54010200	Enhancers	Stomach Mucosa	stomach
3	chr5:54009400-54010600	Enhancers	Aorta	Aorta
4	chr5:54009400-54010600	Enhancers	Osteobl	bone
5	chr5:54009400-54011600	Enhancers	Gastric	stomach
6	chr5:54009400-54011800	Enhancers	Fetal Heart	heart
7	chr5:54009400-54012000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:54009400-54012200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:54009600-54010000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:54009600-54010000	Enhancers	Right Atrium	heart
11	chr5:54009600-54010200	Enhancers	Fetal Intestine Small	intestine
12	chr5:54009800-54010000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:54009800-54010200	Enhancers	Adipose Nuclei	Adipose
14	chr5:54009800-54010600	Enhancers	Fetal Lung	lung
15	chr5:54009800-54010600	Enhancers	NHLF	lung

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