Variant report

Variant	rs56399530
Chromosome Location	chr5:54009126-54009127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10940418	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10940419	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12520114	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12654571	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12655150	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12659390	0.89[ASN][1000 genomes]
rs12659671	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1823053	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034237	0.89[ASN][1000 genomes]
rs4288089	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4342279	0.89[ASN][1000 genomes]
rs4376219	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4865585	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4865865	0.90[ASN][1000 genomes]
rs55774545	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56341116	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57433496	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57534013	0.94[EUR][1000 genomes]
rs57569595	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59617154	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60146924	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7735895	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7736032	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7736999	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53999800-54009400	Weak transcription	Aorta	Aorta
2	chr5:53999800-54009600	Weak transcription	Right Atrium	heart
3	chr5:54002600-54009600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:54003200-54009400	Weak transcription	Fetal Heart	heart
5	chr5:54005800-54009400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:54006200-54009400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:54009000-54010600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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