Variant report

Variant	rs7736999
Chromosome Location	chr5:54012493-54012494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10940418	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10940419	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12520114	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12654571	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12655150	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12659390	0.86[ASN][1000 genomes]
rs12659671	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1823053	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034237	0.89[ASN][1000 genomes]
rs4288089	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4342279	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4376219	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865585	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4865865	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs55774545	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56341116	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56399530	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57433496	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57534013	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57569595	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59617154	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60146924	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7735895	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736032	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965525	chr5:54010194-54018240	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54010200-54014400	Weak transcription	Adipose Nuclei	Adipose
2	chr5:54010600-54014200	Weak transcription	Fetal Lung	lung
3	chr5:54010600-54014400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:54010600-54014400	Weak transcription	NHLF	lung
5	chr5:54010600-54014400	Weak transcription	Osteobl	bone
6	chr5:54010600-54015600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:54010600-54016600	Weak transcription	Aorta	Aorta
8	chr5:54011000-54014600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:54011400-54014400	Weak transcription	Left Ventricle	heart
10	chr5:54011400-54014600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:54011600-54014400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:54011600-54014400	Weak transcription	Right Atrium	heart
13	chr5:54011600-54015000	Weak transcription	Right Ventricle	heart
14	chr5:54011600-54016400	Weak transcription	Gastric	stomach
15	chr5:54011800-54013200	Weak transcription	Fetal Heart	heart
16	chr5:54012000-54014400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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