Variant report

Variant	rs1829675
Chromosome Location	chr2:213008513-213008514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10184407	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10932423	0.92[ASN][1000 genomes]
rs11680307	0.86[ASN][1000 genomes]
rs12465933	0.80[ASN][1000 genomes]
rs12469791	0.80[ASN][1000 genomes]
rs12473715	0.90[ASN][1000 genomes]
rs13384295	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1402768	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1464451	0.91[ASN][1000 genomes]
rs1521655	0.83[ASN][1000 genomes]
rs1521656	0.90[ASN][1000 genomes]
rs1521658	0.94[ASN][1000 genomes]
rs1568520	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56242159	0.84[ASN][1000 genomes]
rs56351822	0.88[ASN][1000 genomes]
rs62184046	0.91[ASN][1000 genomes]
rs6715314	0.91[ASN][1000 genomes]
rs9678442	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213001400-213009400	Weak transcription	Fetal Heart	heart
2	chr2:213003400-213009400	Weak transcription	Fetal Intestine Small	intestine
3	chr2:213007400-213008600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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