Variant report

Variant	rs10932423
Chromosome Location	chr2:213014915-213014916
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213008616..213011501-chr2:213014184..213015998,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10184407	0.92[ASN][1000 genomes]
rs10204324	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11680307	0.89[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11684050	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11690618	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11887531	0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs11902372	0.82[EUR][1000 genomes]
rs12151841	0.84[ASN][1000 genomes]
rs12465933	0.85[ASN][1000 genomes]
rs12468336	0.85[JPT][hapmap]
rs12469791	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12473715	0.91[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.97[ASN][1000 genomes]
rs13384295	0.87[ASN][1000 genomes]
rs1402768	0.90[ASN][1000 genomes]
rs1464451	0.90[ASN][1000 genomes]
rs1521655	0.81[CEU][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1521656	0.91[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs1521658	0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[ASN][1000 genomes]
rs1568520	0.82[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs17344266	0.80[JPT][hapmap]
rs17344385	0.82[CEU][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs17416263	0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs17416297	0.82[CHB][hapmap]
rs1829675	0.92[ASN][1000 genomes]
rs2371442	0.86[JPT][hapmap]
rs2371475	0.86[JPT][hapmap];0.83[MEX][hapmap];0.84[EUR][1000 genomes]
rs2371476	0.86[JPT][hapmap]
rs2888051	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs4571009	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56242159	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56351822	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62184046	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6435689	0.86[JPT][hapmap]
rs6435690	0.86[JPT][hapmap]
rs6715314	0.85[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.88[MEX][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6719517	0.82[EUR][1000 genomes]
rs6738304	0.86[JPT][hapmap];0.84[MEX][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7426206	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs7562352	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7576561	0.83[EUR][1000 genomes]
rs7579502	0.83[EUR][1000 genomes]
rs7579631	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs954553	0.92[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap]
rs9678442	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213013000-213018400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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