Variant report

Variant	rs1568520
Chromosome Location	chr2:213006622-213006623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10184407	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10932423	0.82[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs11680307	0.85[ASN][1000 genomes]
rs11684050	0.80[CHB][hapmap]
rs11690618	0.90[CHB][hapmap]
rs12473715	0.90[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs13384295	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1402768	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1464451	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1521655	0.89[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1521656	0.91[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs1521658	0.90[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs17416263	0.80[CHB][hapmap]
rs17416297	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs1829675	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2371475	0.80[CHB][hapmap]
rs2888051	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs56242159	0.83[ASN][1000 genomes]
rs56351822	0.86[ASN][1000 genomes]
rs62184046	0.89[ASN][1000 genomes]
rs6435689	0.81[EUR][1000 genomes]
rs6715314	0.80[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs6738304	0.90[CHB][hapmap]
rs7426206	0.88[CEU][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7577530	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7583813	0.86[JPT][hapmap]
rs9678442	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213001400-213009400	Weak transcription	Fetal Heart	heart
2	chr2:213003400-213009400	Weak transcription	Fetal Intestine Small	intestine

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