Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10184407	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11680307	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs11684050	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs11690618	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11887531	0.92[JPT][hapmap]
rs12468336	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs12473715	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs13384295	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1402768	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1464451	0.82[AMR][1000 genomes]
rs1521655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1521656	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs1521658	1.00[CHB][hapmap]
rs1568520	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17344266	0.87[JPT][hapmap]
rs17344385	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs17416263	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs17416297	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2371442	0.87[JPT][hapmap]
rs2371475	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs2371476	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2888051	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs56242159	0.82[ASN][1000 genomes]
rs56351822	0.81[ASN][1000 genomes]
rs62184046	0.89[ASN][1000 genomes]
rs6435689	0.93[JPT][hapmap]
rs6435690	0.93[JPT][hapmap]
rs6715314	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6738304	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7426206	0.93[JPT][hapmap];0.82[EUR][1000 genomes]
rs7583813	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs954553	0.92[JPT][hapmap]
rs9678442	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213017600-213021400	Weak transcription	Aorta	Aorta
2	chr2:213018800-213021000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:213018800-213022200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:213019400-213022000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:213019600-213021600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:213019800-213020800	Weak transcription	Fetal Heart	heart
7	chr2:213019800-213021400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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