Variant report

Variant	rs56351822
Chromosome Location	chr2:213018402-213018403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10184407	0.88[ASN][1000 genomes]
rs10204324	0.91[ASN][1000 genomes]
rs10932423	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11677987	0.82[EUR][1000 genomes]
rs11680307	0.98[ASN][1000 genomes]
rs11689043	0.83[EUR][1000 genomes]
rs11689133	0.83[EUR][1000 genomes]
rs11690618	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11695227	0.83[EUR][1000 genomes]
rs11902372	0.80[ASN][1000 genomes]
rs12151841	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12465933	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12468336	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12469791	0.92[ASN][1000 genomes]
rs12473715	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13384295	0.94[ASN][1000 genomes]
rs1402768	0.85[ASN][1000 genomes]
rs1464451	0.88[ASN][1000 genomes]
rs1521655	0.86[ASN][1000 genomes]
rs1521656	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1521658	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1568520	0.86[ASN][1000 genomes]
rs17344266	0.84[ASN][1000 genomes]
rs17344385	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17416263	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1829675	0.88[ASN][1000 genomes]
rs2371476	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2888042	0.83[EUR][1000 genomes]
rs4571009	0.88[ASN][1000 genomes]
rs56242159	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62183999	0.81[EUR][1000 genomes]
rs62184037	0.81[EUR][1000 genomes]
rs62184038	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62184039	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62184046	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6715314	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6738304	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7426206	0.89[ASN][1000 genomes]
rs7562352	0.91[ASN][1000 genomes]
rs7576561	0.81[ASN][1000 genomes]
rs7577530	0.81[ASN][1000 genomes]
rs7579502	0.85[ASN][1000 genomes]
rs7579631	0.91[ASN][1000 genomes]
rs9678442	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213017000-213019200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:213017600-213021400	Weak transcription	Aorta	Aorta
3	chr2:213018400-213019400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:213018400-213019600	Enhancers	Brain Substantia Nigra	brain

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