Variant report

Variant	rs6435689
Chromosome Location	chr2:212975064-212975065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10204324	0.83[ASN][1000 genomes]
rs10932423	0.86[JPT][hapmap]
rs11677987	0.91[ASN][1000 genomes]
rs11680307	1.00[JPT][hapmap]
rs11684050	1.00[JPT][hapmap]
rs11689043	0.91[ASN][1000 genomes]
rs11689133	0.91[ASN][1000 genomes]
rs11690618	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11695227	0.91[ASN][1000 genomes]
rs11887531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11902372	0.91[ASN][1000 genomes]
rs12151841	0.86[ASN][1000 genomes]
rs12465933	0.84[ASN][1000 genomes]
rs12468336	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12469791	0.81[ASN][1000 genomes]
rs12473715	0.93[JPT][hapmap]
rs13384295	0.81[EUR][1000 genomes]
rs1521655	0.93[JPT][hapmap]
rs1521656	0.93[JPT][hapmap]
rs1521658	0.86[JPT][hapmap]
rs1568520	0.81[EUR][1000 genomes]
rs17344266	0.90[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs17344385	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17416263	0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17416297	0.93[JPT][hapmap]
rs2371442	0.80[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2371475	0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2371476	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2888042	0.96[ASN][1000 genomes]
rs2888051	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs4571009	0.86[ASN][1000 genomes]
rs62183999	0.96[ASN][1000 genomes]
rs62184037	0.96[ASN][1000 genomes]
rs62184038	0.90[ASN][1000 genomes]
rs62184039	0.91[ASN][1000 genomes]
rs6435690	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6715314	0.93[JPT][hapmap]
rs6719517	0.94[ASN][1000 genomes]
rs6738304	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7426206	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7562352	0.86[ASN][1000 genomes]
rs7576561	0.90[ASN][1000 genomes]
rs7577530	0.93[JPT][hapmap]
rs7579502	0.83[ASN][1000 genomes]
rs7579631	0.86[ASN][1000 genomes]
rs7583813	0.93[JPT][hapmap]
rs954553	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875804	chr2:212891401-212997024	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212972200-212975400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:212972600-212976000	Enhancers	HUVEC	blood vessel
3	chr2:212972800-212975800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:212973000-212976200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:212973600-212975200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr2:212973600-212975600	Enhancers	Brain Substantia Nigra	brain
7	chr2:212973600-212976000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:212973600-212976000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:212973600-212976000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:212973800-212976400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:212974000-212977800	Enhancers	Fetal Intestine Small	intestine
12	chr2:212974200-212975200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:212974200-212975200	Weak transcription	Aorta	Aorta
14	chr2:212974400-212978600	Weak transcription	Fetal Heart	heart
15	chr2:212974600-212976000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:212974600-212977600	Enhancers	Fetal Intestine Large	intestine
17	chr2:212974800-212975200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:212974800-212975200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr2:212974800-212975200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr2:212974800-212975800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:212975000-212975200	Enhancers	Brain Anterior Caudate	brain
22	chr2:212975000-212975400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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