Variant report

Variant	rs1846618
Chromosome Location	chr3:46106335-46106336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46096990..46098944-chr3:46105207..46107426,2	K562	blood:
2	chr3:46104564..46106749-chr3:46109061..46111797,3	K562	blood:
3	chr3:46036104..46038471-chr3:46105793..46108265,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163820	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10049103	1.00[EUR][1000 genomes]
rs12107160	1.00[EUR][1000 genomes]
rs12107288	1.00[EUR][1000 genomes]
rs13325425	1.00[EUR][1000 genomes]
rs1352880	1.00[EUR][1000 genomes]
rs1491954	1.00[EUR][1000 genomes]
rs17078561	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1846617	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1873615	1.00[EUR][1000 genomes]
rs2036294	1.00[EUR][1000 genomes]
rs2036296	1.00[EUR][1000 genomes]
rs2088691	1.00[EUR][1000 genomes]
rs28393246	1.00[EUR][1000 genomes]
rs28454181	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4630978	1.00[EUR][1000 genomes]
rs55743140	1.00[EUR][1000 genomes]
rs56071453	1.00[EUR][1000 genomes]
rs56840721	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57375372	1.00[EUR][1000 genomes]
rs57590663	1.00[EUR][1000 genomes]
rs57768435	1.00[EUR][1000 genomes]
rs57800045	1.00[EUR][1000 genomes]
rs57887195	1.00[EUR][1000 genomes]
rs58139750	1.00[EUR][1000 genomes]
rs58402224	1.00[EUR][1000 genomes]
rs58969771	1.00[EUR][1000 genomes]
rs59065510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59157393	1.00[EUR][1000 genomes]
rs59676542	1.00[EUR][1000 genomes]
rs59754516	1.00[EUR][1000 genomes]
rs61201782	1.00[EUR][1000 genomes]
rs61276379	1.00[EUR][1000 genomes]
rs61598729	1.00[EUR][1000 genomes]
rs61686943	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6788758	1.00[EUR][1000 genomes]
rs6794222	1.00[EUR][1000 genomes]
rs6798934	1.00[EUR][1000 genomes]
rs72887131	1.00[EUR][1000 genomes]
rs72887154	1.00[EUR][1000 genomes]
rs72889713	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72889714	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72889715	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72889717	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72889737	1.00[EUR][1000 genomes]
rs72889759	1.00[EUR][1000 genomes]
rs72891111	1.00[EUR][1000 genomes]
rs72891128	1.00[EUR][1000 genomes]
rs72891129	1.00[EUR][1000 genomes]
rs72899100	1.00[EUR][1000 genomes]
rs72904134	1.00[EUR][1000 genomes]
rs73830713	1.00[EUR][1000 genomes]
rs73833519	1.00[EUR][1000 genomes]
rs7427033	1.00[EUR][1000 genomes]
rs978316	1.00[EUR][1000 genomes]
rs978317	1.00[EUR][1000 genomes]
rs9814908	1.00[EUR][1000 genomes]
rs9830945	1.00[EUR][1000 genomes]
rs9831926	1.00[EUR][1000 genomes]
rs9844424	1.00[EUR][1000 genomes]
rs9852295	1.00[EUR][1000 genomes]
rs9854654	1.00[EUR][1000 genomes]
rs9859291	1.00[EUR][1000 genomes]
rs9871934	1.00[EUR][1000 genomes]
rs9882976	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46101000-46106400	Weak transcription	Primary B cells from cord blood	blood
2	chr3:46101600-46107000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:46103400-46113600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:46103600-46107000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr3:46103800-46106800	Enhancers	GM12878-XiMat	blood
6	chr3:46103800-46113200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:46103800-46114200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr3:46104000-46113400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr3:46104200-46108400	Enhancers	Fetal Thymus	thymus
10	chr3:46104200-46110000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:46104200-46110200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr3:46104200-46113600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:46104400-46111800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:46104600-46114000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:46104800-46107000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr3:46104800-46109200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:46105000-46106600	Enhancers	Primary T cells from cord blood	blood
18	chr3:46105000-46107000	Weak transcription	Psoas Muscle	Psoas
19	chr3:46105000-46108600	Weak transcription	Spleen	Spleen
20	chr3:46105000-46109800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:46105200-46106800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:46105200-46107000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:46105200-46107000	Weak transcription	Left Ventricle	heart
24	chr3:46105200-46108600	Weak transcription	Aorta	Aorta
25	chr3:46105200-46111000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr3:46105400-46111000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:46105600-46107200	Weak transcription	Adipose Nuclei	Adipose
28	chr3:46105600-46107600	Enhancers	Fetal Heart	heart
29	chr3:46105800-46107200	Enhancers	Dnd41	blood
30	chr3:46105800-46107600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr3:46106000-46106400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr3:46106000-46107000	Enhancers	Esophagus	oesophagus
33	chr3:46106000-46107600	Enhancers	Right Atrium	heart
34	chr3:46106200-46106400	Enhancers	Lung	lung
35	chr3:46106200-46106400	Enhancers	Right Ventricle	heart
36	chr3:46106200-46107600	Bivalent Enhancer	Thymus	Thymus

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